Hb_002814_120

Information

Type -
Description -
Location Contig2814: 192217-193095
Sequence    

Annotation

kegg
ID rcu:RCOM_0701510
description hypothetical protein
nr
ID XP_012071441.1
description PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03983 PE=4 SV=1
Gene Ontology
ID GO:0004852
description uroporphyrinogen iii synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29463: 191511-192242 , PASA_asmbl_29466: 192689-192872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002814_120 0.0 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
2 Hb_003327_030 0.1297074124 - - Hsc70-interacting protein, putative [Ricinus communis]
3 Hb_001009_290 0.131697927 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
4 Hb_000755_080 0.1437319442 - - hypothetical protein RCOM_1016710 [Ricinus communis]
5 Hb_011512_060 0.144874323 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
6 Hb_012132_030 0.1464191787 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
7 Hb_006452_090 0.1471969254 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
8 Hb_004656_060 0.1500981152 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
9 Hb_009558_040 0.1503963125 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
10 Hb_000406_040 0.1547242148 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
11 Hb_000270_140 0.1556275081 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
12 Hb_006816_120 0.1573711877 - - Nicotianamine synthase, putative [Ricinus communis]
13 Hb_001136_090 0.1577812153 - - Protein PNS1, putative [Ricinus communis]
14 Hb_000040_050 0.1583212608 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
15 Hb_004376_030 0.1587913738 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
16 Hb_004712_110 0.1599368597 - - 30S ribosomal protein S10, putative [Ricinus communis]
17 Hb_005228_120 0.1600413955 - - phospholipase d beta, putative [Ricinus communis]
18 Hb_000037_110 0.1612044014 - - PREDICTED: cation/H(+) antiporter 18-like [Populus euphratica]
19 Hb_003236_010 0.1617917467 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
20 Hb_048476_170 0.1620617976 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]

Gene co-expression network

sample Hb_002814_120 Hb_002814_120 Hb_003327_030 Hb_003327_030 Hb_002814_120--Hb_003327_030 Hb_001009_290 Hb_001009_290 Hb_002814_120--Hb_001009_290 Hb_000755_080 Hb_000755_080 Hb_002814_120--Hb_000755_080 Hb_011512_060 Hb_011512_060 Hb_002814_120--Hb_011512_060 Hb_012132_030 Hb_012132_030 Hb_002814_120--Hb_012132_030 Hb_006452_090 Hb_006452_090 Hb_002814_120--Hb_006452_090 Hb_097433_010 Hb_097433_010 Hb_003327_030--Hb_097433_010 Hb_035947_010 Hb_035947_010 Hb_003327_030--Hb_035947_010 Hb_000406_040 Hb_000406_040 Hb_003327_030--Hb_000406_040 Hb_004635_130 Hb_004635_130 Hb_003327_030--Hb_004635_130 Hb_002918_310 Hb_002918_310 Hb_003327_030--Hb_002918_310 Hb_001522_010 Hb_001522_010 Hb_001009_290--Hb_001522_010 Hb_009558_040 Hb_009558_040 Hb_001009_290--Hb_009558_040 Hb_007885_070 Hb_007885_070 Hb_001009_290--Hb_007885_070 Hb_009178_020 Hb_009178_020 Hb_001009_290--Hb_009178_020 Hb_001529_060 Hb_001529_060 Hb_001009_290--Hb_001529_060 Hb_006829_090 Hb_006829_090 Hb_001009_290--Hb_006829_090 Hb_000261_520 Hb_000261_520 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000375_030 Hb_000375_030 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220 Hb_011512_060--Hb_009558_040 Hb_000856_140 Hb_000856_140 Hb_011512_060--Hb_000856_140 Hb_000714_050 Hb_000714_050 Hb_011512_060--Hb_000714_050 Hb_010315_090 Hb_010315_090 Hb_011512_060--Hb_010315_090 Hb_008595_010 Hb_008595_010 Hb_011512_060--Hb_008595_010 Hb_006449_050 Hb_006449_050 Hb_011512_060--Hb_006449_050 Hb_000946_120 Hb_000946_120 Hb_012132_030--Hb_000946_120 Hb_017168_010 Hb_017168_010 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_001541_260 Hb_001541_260 Hb_012132_030--Hb_001541_260 Hb_144787_030 Hb_144787_030 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100 Hb_002217_150 Hb_002217_150 Hb_006452_090--Hb_002217_150 Hb_000768_190 Hb_000768_190 Hb_006452_090--Hb_000768_190 Hb_003001_150 Hb_003001_150 Hb_006452_090--Hb_003001_150 Hb_126643_010 Hb_126643_010 Hb_006452_090--Hb_126643_010 Hb_002291_070 Hb_002291_070 Hb_006452_090--Hb_002291_070 Hb_064903_010 Hb_064903_010 Hb_006452_090--Hb_064903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6248 6.92592 3.78297 2.86083 34.4883 11.8662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56573 4.50455 6.1606 7.13854 6.93645

CAGE analysis