Hb_002815_050

Information

Type -
Description -
Location Contig2815: 106159-111712
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08140g
description POPTRDRAFT_765697; SUCCINIC SEMIALDEHYDE DEHYDROGENASE family protein
nr
ID XP_011027795.1
description PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
swissprot
ID P94358
description Uncharacterized aldehyde dehydrogenase AldY OS=Bacillus subtilis (strain 168) GN=aldY PE=1 SV=1
trembl
ID B9HI33
description SUCCINIC SEMIALDEHYDE DEHYDROGENASE family protein OS=Populus trichocarpa GN=POPTR_0008s08140g PE=3 SV=1
Gene Ontology
ID GO:0009570
description succinate-semialdehyde mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29467: 85035-131762 , PASA_asmbl_29470: 106296-109024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002815_050 0.0 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
2 Hb_005679_070 0.0957089002 - - hypothetical protein M569_07741, partial [Genlisea aurea]
3 Hb_003030_040 0.1066698312 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
4 Hb_007188_030 0.1156001634 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
5 Hb_003656_150 0.1461284274 - - -
6 Hb_022891_010 0.1461287552 - - chitinase-like protein [Hevea brasiliensis]
7 Hb_068014_010 0.1468060127 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
8 Hb_177103_010 0.1602068068 - - PREDICTED: histone H2AX [Elaeis guineensis]
9 Hb_000329_560 0.1662130953 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006198_090 0.1673524918 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
11 Hb_001998_140 0.1680055871 - - -
12 Hb_130367_010 0.1701094197 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
13 Hb_002078_500 0.1712552034 - - conserved hypothetical protein [Ricinus communis]
14 Hb_032258_020 0.1733350717 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
15 Hb_000181_150 0.1766511957 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
16 Hb_031866_050 0.1775633647 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
17 Hb_007083_020 0.1782033026 - - hypothetical protein F775_15403 [Aegilops tauschii]
18 Hb_026228_010 0.1789182726 - - conserved hypothetical protein [Ricinus communis]
19 Hb_183522_010 0.1804960229 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_169170_010 0.1822296972 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_002815_050 Hb_002815_050 Hb_005679_070 Hb_005679_070 Hb_002815_050--Hb_005679_070 Hb_003030_040 Hb_003030_040 Hb_002815_050--Hb_003030_040 Hb_007188_030 Hb_007188_030 Hb_002815_050--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_002815_050--Hb_003656_150 Hb_022891_010 Hb_022891_010 Hb_002815_050--Hb_022891_010 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_003030_040--Hb_007188_030 Hb_003030_040--Hb_003656_150 Hb_005107_020 Hb_005107_020 Hb_003030_040--Hb_005107_020 Hb_003030_040--Hb_005679_070 Hb_007188_030--Hb_003656_150 Hb_006198_090 Hb_006198_090 Hb_007188_030--Hb_006198_090 Hb_177103_010 Hb_177103_010 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_005679_070 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_130367_010 Hb_130367_010 Hb_022891_010--Hb_130367_010 Hb_000034_090 Hb_000034_090 Hb_022891_010--Hb_000034_090 Hb_022891_010--Hb_007188_030 Hb_000098_300 Hb_000098_300 Hb_022891_010--Hb_000098_300 Hb_022891_010--Hb_003030_040 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99047 5.69358 3.60518 112.488 8.87141 154.573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6641 17.0897 13.739 32.8037 25.0857

CAGE analysis