Hb_002815_060

Information

Type -
Description -
Location Contig2815: 121563-124786
Sequence    

Annotation

kegg
ID egr:104451041
description succinate-semialdehyde dehydrogenase, mitochondrial
nr
ID KJB14092.1
description hypothetical protein B456_002G110500 [Gossypium raimondii]
swissprot
ID Q9SAK4
description Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2
trembl
ID A0A0D2M9F7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G110500 PE=4 SV=1
Gene Ontology
ID GO:0009570
description succinate-semialdehyde mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29467: 85035-131762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002815_060 0.0 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
2 Hb_002742_070 0.0837561327 - - PREDICTED: villin-4-like [Jatropha curcas]
3 Hb_011206_010 0.0958930461 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
4 Hb_001731_020 0.1054901742 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
5 Hb_031069_020 0.1081623671 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
6 Hb_002903_080 0.11027213 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
7 Hb_001040_120 0.1107640035 - - allantoinase, putative [Ricinus communis]
8 Hb_058702_010 0.1121578504 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
9 Hb_003157_030 0.1131251357 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
10 Hb_081879_030 0.1142228969 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
11 Hb_010180_040 0.1151802869 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
12 Hb_000329_490 0.1153106206 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
13 Hb_000108_080 0.1163180207 - - PREDICTED: importin-5 [Jatropha curcas]
14 Hb_000487_220 0.1165965523 - - eukaryotic translation elongation factor, putative [Ricinus communis]
15 Hb_015099_010 0.1180213629 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
16 Hb_003029_130 0.1184133017 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
17 Hb_010128_120 0.1192608444 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
18 Hb_004037_030 0.1195264011 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
19 Hb_000029_320 0.1205615542 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
20 Hb_006501_020 0.1208804307 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_002815_060 Hb_002815_060 Hb_002742_070 Hb_002742_070 Hb_002815_060--Hb_002742_070 Hb_011206_010 Hb_011206_010 Hb_002815_060--Hb_011206_010 Hb_001731_020 Hb_001731_020 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002903_080 Hb_002903_080 Hb_002815_060--Hb_002903_080 Hb_001040_120 Hb_001040_120 Hb_002815_060--Hb_001040_120 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_003157_030 Hb_003157_030 Hb_002742_070--Hb_003157_030 Hb_010128_120 Hb_010128_120 Hb_002742_070--Hb_010128_120 Hb_000330_160 Hb_000330_160 Hb_002742_070--Hb_000330_160 Hb_011953_030 Hb_011953_030 Hb_002742_070--Hb_011953_030 Hb_011206_010--Hb_001731_020 Hb_000213_070 Hb_000213_070 Hb_011206_010--Hb_000213_070 Hb_000085_090 Hb_000085_090 Hb_011206_010--Hb_000085_090 Hb_171788_010 Hb_171788_010 Hb_011206_010--Hb_171788_010 Hb_019053_020 Hb_019053_020 Hb_011206_010--Hb_019053_020 Hb_001731_020--Hb_031069_020 Hb_001489_070 Hb_001489_070 Hb_001731_020--Hb_001489_070 Hb_078477_040 Hb_078477_040 Hb_001731_020--Hb_078477_040 Hb_004920_060 Hb_004920_060 Hb_001731_020--Hb_004920_060 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_001731_020--Hb_006588_050 Hb_031069_020--Hb_078477_040 Hb_001901_080 Hb_001901_080 Hb_031069_020--Hb_001901_080 Hb_000640_200 Hb_000640_200 Hb_031069_020--Hb_000640_200 Hb_031069_020--Hb_006588_050 Hb_006501_020 Hb_006501_020 Hb_031069_020--Hb_006501_020 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_081879_030 Hb_081879_030 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_000029_320 Hb_000029_320 Hb_001040_120--Hb_000029_320 Hb_010180_040 Hb_010180_040 Hb_001040_120--Hb_010180_040 Hb_002070_070 Hb_002070_070 Hb_001040_120--Hb_002070_070 Hb_002159_040 Hb_002159_040 Hb_001040_120--Hb_002159_040 Hb_015763_030 Hb_015763_030 Hb_001040_120--Hb_015763_030 Hb_011497_010 Hb_011497_010 Hb_001040_120--Hb_011497_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.698 82.936 39.6935 73.2187 129.575 262.99
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9459 18.3066 31.2928 75.4156 36.3844

CAGE analysis