Hb_002815_070

Information

Type -
Description -
Location Contig2815: 128784-131749
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G048300g
description hypothetical protein
nr
ID XP_007149181.1
description hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7BVW3
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G048300g PE=4 SV=1
Gene Ontology
ID GO:0009013
description succinate-semialdehyde mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29467: 85035-131762
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002815_070 0.0 - - hypothetical protein PHAVU_005G048300g [Phaseolus vulgaris]
2 Hb_000160_160 0.2115055623 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
3 Hb_012627_020 0.2143480285 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
4 Hb_000599_100 0.2252604496 - - hypothetical protein B456_001G254000 [Gossypium raimondii]
5 Hb_017462_010 0.2421996429 - - -
6 Hb_004448_090 0.2433090456 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
7 Hb_005679_070 0.2449784653 - - hypothetical protein M569_07741, partial [Genlisea aurea]
8 Hb_164096_010 0.2464758131 - - hypothetical protein L484_021244 [Morus notabilis]
9 Hb_127552_060 0.2472900969 transcription factor TF Family: SWI/SNF-BAF60b protein binding protein, putative [Ricinus communis]
10 Hb_001840_070 0.2489427662 - - DNA binding protein, putative [Ricinus communis]
11 Hb_052402_010 0.2490233646 - - -
12 Hb_075964_010 0.2493236069 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
13 Hb_002205_060 0.2555332949 - - -
14 Hb_000181_150 0.2563379646 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
15 Hb_115477_010 0.2565458025 - - Protein dom-3, putative [Ricinus communis]
16 Hb_171789_010 0.2578123147 - - phosphoenolpyruvate carboxylase [Glycine max]
17 Hb_008447_030 0.2593736747 - - -
18 Hb_001998_140 0.2601441924 - - -
19 Hb_001260_030 0.2614836916 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001427_060 0.2617768462 - - -

Gene co-expression network

sample Hb_002815_070 Hb_002815_070 Hb_000160_160 Hb_000160_160 Hb_002815_070--Hb_000160_160 Hb_012627_020 Hb_012627_020 Hb_002815_070--Hb_012627_020 Hb_000599_100 Hb_000599_100 Hb_002815_070--Hb_000599_100 Hb_017462_010 Hb_017462_010 Hb_002815_070--Hb_017462_010 Hb_004448_090 Hb_004448_090 Hb_002815_070--Hb_004448_090 Hb_005679_070 Hb_005679_070 Hb_002815_070--Hb_005679_070 Hb_002200_050 Hb_002200_050 Hb_000160_160--Hb_002200_050 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_000160_160--Hb_012627_020 Hb_008447_030 Hb_008447_030 Hb_000160_160--Hb_008447_030 Hb_000329_560 Hb_000329_560 Hb_000160_160--Hb_000329_560 Hb_025190_010 Hb_025190_010 Hb_000160_160--Hb_025190_010 Hb_012627_020--Hb_000656_090 Hb_004333_050 Hb_004333_050 Hb_012627_020--Hb_004333_050 Hb_127552_060 Hb_127552_060 Hb_012627_020--Hb_127552_060 Hb_008447_040 Hb_008447_040 Hb_012627_020--Hb_008447_040 Hb_012627_020--Hb_008447_030 Hb_003253_050 Hb_003253_050 Hb_000599_100--Hb_003253_050 Hb_033501_010 Hb_033501_010 Hb_000599_100--Hb_033501_010 Hb_062007_010 Hb_062007_010 Hb_000599_100--Hb_062007_010 Hb_000721_040 Hb_000721_040 Hb_000599_100--Hb_000721_040 Hb_000001_190 Hb_000001_190 Hb_000599_100--Hb_000001_190 Hb_001089_040 Hb_001089_040 Hb_000599_100--Hb_001089_040 Hb_116632_010 Hb_116632_010 Hb_017462_010--Hb_116632_010 Hb_015026_150 Hb_015026_150 Hb_017462_010--Hb_015026_150 Hb_002784_070 Hb_002784_070 Hb_017462_010--Hb_002784_070 Hb_007188_020 Hb_007188_020 Hb_017462_010--Hb_007188_020 Hb_007484_040 Hb_007484_040 Hb_017462_010--Hb_007484_040 Hb_014834_040 Hb_014834_040 Hb_017462_010--Hb_014834_040 Hb_004448_090--Hb_008447_040 Hb_004448_090--Hb_127552_060 Hb_028912_040 Hb_028912_040 Hb_004448_090--Hb_028912_040 Hb_000071_180 Hb_000071_180 Hb_004448_090--Hb_000071_180 Hb_000038_080 Hb_000038_080 Hb_004448_090--Hb_000038_080 Hb_002419_030 Hb_002419_030 Hb_004448_090--Hb_002419_030 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1755 9.34914 4.03998 73.1331 16.6047 300.36
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.5787 34.8815 61.549 207.729 57.2363

CAGE analysis