Hb_002817_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2817: 84993-86644
Sequence    

Annotation

kegg
ID pop:POPTR_0004s16810g
description POPTRDRAFT_855496; hypothetical protein
nr
ID XP_002305454.2
description hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
swissprot
ID Q9LQZ7
description B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1
trembl
ID B9H0W3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s16810g PE=4 SV=2
Gene Ontology
ID GO:0005622
description probable salt tolerance-like protein at1g75540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29482: 84942-85683 , PASA_asmbl_29485: 85800-86435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002817_050 0.0 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
2 Hb_005493_010 0.1128335514 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000901_010 0.1184122552 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
4 Hb_000181_220 0.1344484132 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
5 Hb_004374_160 0.1363248088 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
6 Hb_010557_020 0.1407914679 - - Mlo protein [Hevea brasiliensis]
7 Hb_000162_200 0.1417617792 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
8 Hb_001278_090 0.1436310662 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
9 Hb_000318_010 0.1436375715 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
10 Hb_017358_020 0.1480057451 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
11 Hb_001405_040 0.1482143311 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
12 Hb_002716_110 0.1488444082 - - PREDICTED: interaptin [Jatropha curcas]
13 Hb_001046_030 0.1493253557 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001488_350 0.1498245868 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005892_040 0.151452873 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
16 Hb_000290_030 0.1521384159 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
17 Hb_001417_060 0.1525361203 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
18 Hb_002724_010 0.1531641669 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
19 Hb_000076_060 0.153512648 - - hypothetical protein RCOM_0586940 [Ricinus communis]
20 Hb_029639_030 0.1535341602 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002817_050 Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_002817_050--Hb_005493_010 Hb_000901_010 Hb_000901_010 Hb_002817_050--Hb_000901_010 Hb_000181_220 Hb_000181_220 Hb_002817_050--Hb_000181_220 Hb_004374_160 Hb_004374_160 Hb_002817_050--Hb_004374_160 Hb_010557_020 Hb_010557_020 Hb_002817_050--Hb_010557_020 Hb_000162_200 Hb_000162_200 Hb_002817_050--Hb_000162_200 Hb_030827_010 Hb_030827_010 Hb_005493_010--Hb_030827_010 Hb_001278_090 Hb_001278_090 Hb_005493_010--Hb_001278_090 Hb_002949_020 Hb_002949_020 Hb_005493_010--Hb_002949_020 Hb_002235_110 Hb_002235_110 Hb_005493_010--Hb_002235_110 Hb_074197_030 Hb_074197_030 Hb_005493_010--Hb_074197_030 Hb_002078_320 Hb_002078_320 Hb_000901_010--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000901_010--Hb_000987_020 Hb_004946_010 Hb_004946_010 Hb_000901_010--Hb_004946_010 Hb_020805_070 Hb_020805_070 Hb_000901_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_000901_010--Hb_004855_080 Hb_000260_750 Hb_000260_750 Hb_000901_010--Hb_000260_750 Hb_029639_030 Hb_029639_030 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_004374_160--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_004374_160--Hb_039435_010 Hb_000621_030 Hb_000621_030 Hb_004374_160--Hb_000621_030 Hb_004881_070 Hb_004881_070 Hb_004374_160--Hb_004881_070 Hb_004374_160--Hb_005493_010 Hb_000290_030 Hb_000290_030 Hb_010557_020--Hb_000290_030 Hb_000856_200 Hb_000856_200 Hb_010557_020--Hb_000856_200 Hb_010222_040 Hb_010222_040 Hb_010557_020--Hb_010222_040 Hb_144449_010 Hb_144449_010 Hb_010557_020--Hb_144449_010 Hb_000473_100 Hb_000473_100 Hb_010557_020--Hb_000473_100 Hb_010557_020--Hb_000162_200 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_003506_010 Hb_003506_010 Hb_000162_200--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_000162_200--Hb_004162_320 Hb_000977_030 Hb_000977_030 Hb_000162_200--Hb_000977_030 Hb_005892_040 Hb_005892_040 Hb_000162_200--Hb_005892_040 Hb_000162_200--Hb_007894_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.314781 0.988053 1.08712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.143048 0 0.473643 1.32474

CAGE analysis