Hb_002817_060

Information

Type -
Description -
Location Contig2817: 106655-114866
Sequence    

Annotation

kegg
ID rcu:RCOM_1449180
description coatomer alpha subunit, putative (EC:2.7.11.7)
nr
ID XP_012067196.1
description PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
swissprot
ID Q94A40
description Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=2 SV=2
trembl
ID A0A067L3H5
description Coatomer subunit alpha OS=Jatropha curcas GN=JCGZ_26756 PE=4 SV=1
Gene Ontology
ID GO:0030126
description coatomer subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29486: 109005-114823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002817_060 0.0 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
2 Hb_000347_300 0.0483287169 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
3 Hb_001828_170 0.0611753907 - - PREDICTED: protein TPLATE [Jatropha curcas]
4 Hb_001511_180 0.0719788418 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
5 Hb_001329_250 0.0795195881 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
6 Hb_006839_010 0.081057711 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
7 Hb_000123_180 0.0832212567 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
8 Hb_000059_230 0.0847740455 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
9 Hb_003417_010 0.0855853201 - - PREDICTED: protein TPLATE [Jatropha curcas]
10 Hb_005977_070 0.0857514261 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
11 Hb_012055_040 0.0859605524 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
12 Hb_000340_080 0.0884112905 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
13 Hb_023344_160 0.0897858185 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
14 Hb_009296_080 0.0899619078 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
15 Hb_004044_050 0.0901024725 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
16 Hb_009476_120 0.091169248 - - Clathrin heavy chain 1 [Glycine soja]
17 Hb_002235_200 0.0928488659 - - pattern formation protein, putative [Ricinus communis]
18 Hb_001377_100 0.0935913585 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
19 Hb_002400_060 0.0942648606 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
20 Hb_000809_250 0.0948231225 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]

Gene co-expression network

sample Hb_002817_060 Hb_002817_060 Hb_000347_300 Hb_000347_300 Hb_002817_060--Hb_000347_300 Hb_001828_170 Hb_001828_170 Hb_002817_060--Hb_001828_170 Hb_001511_180 Hb_001511_180 Hb_002817_060--Hb_001511_180 Hb_001329_250 Hb_001329_250 Hb_002817_060--Hb_001329_250 Hb_006839_010 Hb_006839_010 Hb_002817_060--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002817_060--Hb_000123_180 Hb_000347_300--Hb_001828_170 Hb_022425_030 Hb_022425_030 Hb_000347_300--Hb_022425_030 Hb_004044_050 Hb_004044_050 Hb_000347_300--Hb_004044_050 Hb_022425_060 Hb_022425_060 Hb_000347_300--Hb_022425_060 Hb_002686_140 Hb_002686_140 Hb_000347_300--Hb_002686_140 Hb_001828_170--Hb_022425_060 Hb_001828_170--Hb_001329_250 Hb_001828_170--Hb_022425_030 Hb_003498_080 Hb_003498_080 Hb_001828_170--Hb_003498_080 Hb_009476_120 Hb_009476_120 Hb_001511_180--Hb_009476_120 Hb_033799_010 Hb_033799_010 Hb_001511_180--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_001511_180--Hb_005074_020 Hb_000890_070 Hb_000890_070 Hb_001511_180--Hb_000890_070 Hb_001511_180--Hb_000347_300 Hb_001329_250--Hb_003498_080 Hb_000212_420 Hb_000212_420 Hb_001329_250--Hb_000212_420 Hb_005214_140 Hb_005214_140 Hb_001329_250--Hb_005214_140 Hb_001329_250--Hb_004044_050 Hb_000270_190 Hb_000270_190 Hb_001329_250--Hb_000270_190 Hb_000059_230 Hb_000059_230 Hb_006839_010--Hb_000059_230 Hb_009288_020 Hb_009288_020 Hb_006839_010--Hb_009288_020 Hb_004374_110 Hb_004374_110 Hb_006839_010--Hb_004374_110 Hb_003040_050 Hb_003040_050 Hb_006839_010--Hb_003040_050 Hb_005215_010 Hb_005215_010 Hb_006839_010--Hb_005215_010 Hb_001377_100 Hb_001377_100 Hb_006839_010--Hb_001377_100 Hb_000494_050 Hb_000494_050 Hb_000123_180--Hb_000494_050 Hb_011819_020 Hb_011819_020 Hb_000123_180--Hb_011819_020 Hb_012632_010 Hb_012632_010 Hb_000123_180--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_000123_180--Hb_002890_130 Hb_004019_120 Hb_004019_120 Hb_000123_180--Hb_004019_120 Hb_012518_070 Hb_012518_070 Hb_000123_180--Hb_012518_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6733 59.5855 31.2353 62.0796 27.2793 27.1941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9018 14.5031 37.8012 42.2518 64.0974

CAGE analysis