Hb_002818_040

Information

Type -
Description -
Location Contig2818: 58855-67021
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18810g
description POPTRDRAFT_552617; tRNA synthetase-related family protein
nr
ID XP_002301553.1
description tRNA synthetase-related family protein [Populus trichocarpa]
swissprot
ID O60155
description Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prs1 PE=3 SV=1
trembl
ID B9GTA1
description tRNA synthetase-related family protein OS=Populus trichocarpa GN=POPTR_0002s18810g PE=3 SV=1
Gene Ontology
ID GO:0005737
description proline--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29489: 58906-67017
cDNA
(Sanger)
(ID:Location)		 007_F10.ab1: 58907-63309 , 024_E10.ab1: 58912-63268 , 034_M20.ab1: 58912-63330 , 040_D16.ab1: 58910-63330 , 045_J24.ab1: 58910-63319 , 045_L10.ab1: 58912-63258 , 047_K13.ab1: 58912-63299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_040 0.0 - - tRNA synthetase-related family protein [Populus trichocarpa]
2 Hb_000340_510 0.0523371671 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
3 Hb_000462_150 0.0536638694 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
4 Hb_003384_030 0.055237357 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
5 Hb_000001_180 0.057260432 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
6 Hb_005314_010 0.0659040757 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_005914_230 0.0704825041 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
8 Hb_001969_040 0.07190149 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_011496_010 0.0750199334 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
10 Hb_004324_280 0.075255854 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
11 Hb_004678_020 0.0778622706 - - PREDICTED: protein YIF1B [Jatropha curcas]
12 Hb_002169_010 0.0783260536 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_001936_050 0.078376494 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
14 Hb_007786_010 0.0793526282 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
15 Hb_000161_030 0.0805271081 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
16 Hb_001584_110 0.082545448 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
17 Hb_000490_030 0.0826531162 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
18 Hb_017168_010 0.0827803167 - - conserved hypothetical protein [Ricinus communis]
19 Hb_029281_010 0.0836238984 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
20 Hb_000481_010 0.083632329 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]

Gene co-expression network

sample Hb_002818_040 Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_002818_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000462_150--Hb_000001_180 Hb_003384_030--Hb_000001_180 Hb_003384_030--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_003384_030--Hb_001969_040 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_000001_180--Hb_005914_230 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
600.327 190.393 90.9118 85.4576 621.846 571.143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
296.279 202.296 346.943 115.03 69.6974

CAGE analysis