Hb_002818_050

Information

Type -
Description -
Location Contig2818: 71454-75055
Sequence    

Annotation

kegg
ID rcu:RCOM_2127210
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012083013.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067K7V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14116 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29492: 74673-75124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_050 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_010942_020 0.1110864348 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002541_020 0.1515101832 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_084513_010 0.1684302838 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
5 Hb_001519_040 0.1702683828 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
6 Hb_003605_040 0.1725728712 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
7 Hb_001268_340 0.1731536483 - - Actin, putative [Ricinus communis]
8 Hb_010883_140 0.1766766754 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
9 Hb_001369_800 0.1804745807 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
10 Hb_000742_190 0.1821799978 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002498_240 0.1847945867 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
12 Hb_164010_050 0.1864069446 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
13 Hb_004032_160 0.1873858045 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
14 Hb_000413_070 0.1903671104 - - conserved hypothetical protein [Ricinus communis]
15 Hb_074449_010 0.1906279281 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
16 Hb_002804_020 0.1916114162 - - epsin N-terminal homology domain-containing family protein [Populus trichocarpa]
17 Hb_000258_040 0.1948770744 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
18 Hb_000003_030 0.1953375575 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000656_300 0.1964336995 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
20 Hb_000818_100 0.1990798437 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_002818_050 Hb_002818_050 Hb_010942_020 Hb_010942_020 Hb_002818_050--Hb_010942_020 Hb_002541_020 Hb_002541_020 Hb_002818_050--Hb_002541_020 Hb_084513_010 Hb_084513_010 Hb_002818_050--Hb_084513_010 Hb_001519_040 Hb_001519_040 Hb_002818_050--Hb_001519_040 Hb_003605_040 Hb_003605_040 Hb_002818_050--Hb_003605_040 Hb_001268_340 Hb_001268_340 Hb_002818_050--Hb_001268_340 Hb_002804_020 Hb_002804_020 Hb_010942_020--Hb_002804_020 Hb_074449_010 Hb_074449_010 Hb_010942_020--Hb_074449_010 Hb_004032_160 Hb_004032_160 Hb_010942_020--Hb_004032_160 Hb_010942_020--Hb_002541_020 Hb_010942_020--Hb_001519_040 Hb_002541_020--Hb_002804_020 Hb_000413_070 Hb_000413_070 Hb_002541_020--Hb_000413_070 Hb_002541_020--Hb_074449_010 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_000258_040 Hb_000258_040 Hb_084513_010--Hb_000258_040 Hb_000322_180 Hb_000322_180 Hb_084513_010--Hb_000322_180 Hb_001160_070 Hb_001160_070 Hb_084513_010--Hb_001160_070 Hb_002874_090 Hb_002874_090 Hb_084513_010--Hb_002874_090 Hb_001307_240 Hb_001307_240 Hb_084513_010--Hb_001307_240 Hb_000334_260 Hb_000334_260 Hb_084513_010--Hb_000334_260 Hb_006588_160 Hb_006588_160 Hb_001519_040--Hb_006588_160 Hb_026234_010 Hb_026234_010 Hb_001519_040--Hb_026234_010 Hb_000154_050 Hb_000154_050 Hb_001519_040--Hb_000154_050 Hb_016448_010 Hb_016448_010 Hb_001519_040--Hb_016448_010 Hb_000098_240 Hb_000098_240 Hb_001519_040--Hb_000098_240 Hb_001824_030 Hb_001824_030 Hb_001519_040--Hb_001824_030 Hb_008119_030 Hb_008119_030 Hb_003605_040--Hb_008119_030 Hb_164010_050 Hb_164010_050 Hb_003605_040--Hb_164010_050 Hb_009222_070 Hb_009222_070 Hb_003605_040--Hb_009222_070 Hb_002498_240 Hb_002498_240 Hb_003605_040--Hb_002498_240 Hb_009808_010 Hb_009808_010 Hb_003605_040--Hb_009808_010 Hb_000818_100 Hb_000818_100 Hb_003605_040--Hb_000818_100 Hb_000656_300 Hb_000656_300 Hb_001268_340--Hb_000656_300 Hb_003540_050 Hb_003540_050 Hb_001268_340--Hb_003540_050 Hb_001195_640 Hb_001195_640 Hb_001268_340--Hb_001195_640 Hb_001268_340--Hb_004032_160 Hb_000072_300 Hb_000072_300 Hb_001268_340--Hb_000072_300 Hb_004117_190 Hb_004117_190 Hb_001268_340--Hb_004117_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53839 1.46391 3.57612 5.25373 0.406263 1.96403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16659 0.330444 0.034784 1.73877 1.16287

CAGE analysis