Hb_002818_080

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig2818: 95579-96915
Sequence    

Annotation

kegg
ID rcu:RCOM_1343160
description Auxin-responsive protein IAA20, putative
nr
ID XP_002515174.1
description Auxin-responsive protein IAA20, putative [Ricinus communis]
swissprot
ID Q9M1R4
description Auxin-responsive protein IAA30 OS=Arabidopsis thaliana GN=IAA30 PE=2 SV=1
trembl
ID B9RN35
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_1343160 PE=3 SV=1
Gene Ontology
ID GO:0005634
description aux iaa family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_080 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
2 Hb_001699_240 0.0584150337 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
3 Hb_009568_010 0.071208309 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
4 Hb_000141_070 0.079708477 - - l-lactate dehydrogenase, putative [Ricinus communis]
5 Hb_001930_060 0.0829455499 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
6 Hb_001456_040 0.0841477068 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
7 Hb_007483_040 0.0842854785 - - PREDICTED: protein SRG1-like [Jatropha curcas]
8 Hb_005614_040 0.0866806189 - - unnamed protein product [Coffea canephora]
9 Hb_000712_070 0.0870347944 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003891_060 0.0874244181 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
11 Hb_003334_080 0.0894412541 - - Reticuline oxidase precursor, putative [Ricinus communis]
12 Hb_000446_100 0.0895285543 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_002553_170 0.0900317624 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
14 Hb_000503_040 0.0902291609 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_166232_010 0.0907426558 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
16 Hb_001301_020 0.0909138036 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
17 Hb_002805_230 0.0940315354 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
18 Hb_004693_010 0.0959209251 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
19 Hb_058620_050 0.0959965494 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_000109_110 0.0965291104 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002818_080 Hb_002818_080 Hb_001699_240 Hb_001699_240 Hb_002818_080--Hb_001699_240 Hb_009568_010 Hb_009568_010 Hb_002818_080--Hb_009568_010 Hb_000141_070 Hb_000141_070 Hb_002818_080--Hb_000141_070 Hb_001930_060 Hb_001930_060 Hb_002818_080--Hb_001930_060 Hb_001456_040 Hb_001456_040 Hb_002818_080--Hb_001456_040 Hb_007483_040 Hb_007483_040 Hb_002818_080--Hb_007483_040 Hb_002805_230 Hb_002805_230 Hb_001699_240--Hb_002805_230 Hb_005614_040 Hb_005614_040 Hb_001699_240--Hb_005614_040 Hb_000503_040 Hb_000503_040 Hb_001699_240--Hb_000503_040 Hb_001699_240--Hb_007483_040 Hb_000712_070 Hb_000712_070 Hb_001699_240--Hb_000712_070 Hb_009568_010--Hb_000141_070 Hb_009568_010--Hb_007483_040 Hb_003334_080 Hb_003334_080 Hb_009568_010--Hb_003334_080 Hb_000446_100 Hb_000446_100 Hb_009568_010--Hb_000446_100 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_000141_070--Hb_007483_040 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_000141_070--Hb_001456_040 Hb_166232_010 Hb_166232_010 Hb_001930_060--Hb_166232_010 Hb_002553_170 Hb_002553_170 Hb_001930_060--Hb_002553_170 Hb_002835_020 Hb_002835_020 Hb_001930_060--Hb_002835_020 Hb_001930_060--Hb_003334_080 Hb_001301_020 Hb_001301_020 Hb_001930_060--Hb_001301_020 Hb_001930_060--Hb_009568_010 Hb_001456_040--Hb_020480_050 Hb_001456_040--Hb_000446_100 Hb_000500_190 Hb_000500_190 Hb_001456_040--Hb_000500_190 Hb_004254_070 Hb_004254_070 Hb_001456_040--Hb_004254_070 Hb_010697_030 Hb_010697_030 Hb_007483_040--Hb_010697_030 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_003334_080 Hb_007483_040--Hb_000712_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0207739 0.346205 0.368107 0.630395 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0950764 0.0747808 0 20.0194 0

CAGE analysis