Hb_002818_110

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2818: 137234-141181
Sequence    

Annotation

kegg
ID rcu:RCOM_1343120
description hypothetical protein
nr
ID XP_002515170.1
description hypothetical protein RCOM_1343120 [Ricinus communis]
swissprot
ID Q8L5W8
description Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
trembl
ID B9RN31
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1343120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29498: 138838-141189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_110 0.0 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
2 Hb_000061_010 0.0388045043 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000210_030 0.0420089168 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
4 Hb_006573_110 0.0422098299 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
5 Hb_001675_090 0.0424491583 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
6 Hb_008013_020 0.0452627437 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
7 Hb_000719_030 0.0487733551 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
8 Hb_000262_090 0.05474744 - - Root phototropism protein, putative [Ricinus communis]
9 Hb_001135_310 0.0549517683 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
10 Hb_003573_030 0.0569953525 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
11 Hb_146225_020 0.0589980565 - - chlorophyll A/B binding protein, putative [Ricinus communis]
12 Hb_013726_060 0.0616445618 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
13 Hb_001717_060 0.0623677456 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
14 Hb_000510_180 0.0631499895 - - unknown [Lotus japonicus]
15 Hb_000281_120 0.0665915079 - - protein binding protein, putative [Ricinus communis]
16 Hb_000821_030 0.068649585 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
17 Hb_005280_020 0.0687233254 - - glycine cleavage system h protein, putative [Ricinus communis]
18 Hb_000018_110 0.0689969281 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
19 Hb_003651_030 0.0690335303 - - lyase, putative [Ricinus communis]
20 Hb_003921_020 0.0691594241 - - hypothetical protein JCGZ_10628 [Jatropha curcas]

Gene co-expression network

sample Hb_002818_110 Hb_002818_110 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_000210_030 Hb_000210_030 Hb_002818_110--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_002818_110--Hb_006573_110 Hb_001675_090 Hb_001675_090 Hb_002818_110--Hb_001675_090 Hb_008013_020 Hb_008013_020 Hb_002818_110--Hb_008013_020 Hb_000719_030 Hb_000719_030 Hb_002818_110--Hb_000719_030 Hb_000061_010--Hb_001675_090 Hb_000061_010--Hb_000210_030 Hb_000061_010--Hb_006573_110 Hb_000018_110 Hb_000018_110 Hb_000061_010--Hb_000018_110 Hb_000262_090 Hb_000262_090 Hb_000061_010--Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000210_030--Hb_001675_090 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_000210_030--Hb_006573_110 Hb_006573_110--Hb_008013_020 Hb_003921_020 Hb_003921_020 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_000262_090 Hb_006573_110--Hb_000821_030 Hb_001675_090--Hb_000719_030 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_009476_030 Hb_009476_030 Hb_001675_090--Hb_009476_030 Hb_008013_020--Hb_003921_020 Hb_008013_020--Hb_000262_090 Hb_008013_020--Hb_000821_030 Hb_008013_020--Hb_000210_030 Hb_146225_020 Hb_146225_020 Hb_000719_030--Hb_146225_020 Hb_001135_310 Hb_001135_310 Hb_000719_030--Hb_001135_310 Hb_013726_060 Hb_013726_060 Hb_000719_030--Hb_013726_060 Hb_001571_100 Hb_001571_100 Hb_000719_030--Hb_001571_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0265282 1.99151 82.6883 21.3129 0.0107066 0.0103655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0243076 0 0 0.0913677 81.4392

CAGE analysis