Hb_002818_170

Information

Type -
Description -
Location Contig2818: 175038-183319
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10650g
description POPTRDRAFT_572510; hypothetical protein
nr
ID XP_002320250.2
description hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
swissprot
ID Q66GM8
description Pectin acetylesterase 10 OS=Arabidopsis thaliana GN=PAE10 PE=2 SV=1
trembl
ID B9I994
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10650g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29504: 175193-183309 , PASA_asmbl_29505: 180471-182909 , PASA_asmbl_29506: 176072-183309 , PASA_asmbl_29507: 175373-179675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_170 0.0 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
2 Hb_006277_030 0.0605115343 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003189_010 0.0717552938 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
4 Hb_002097_180 0.0722530959 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
5 Hb_006501_100 0.0810727323 - - malic enzyme, putative [Ricinus communis]
6 Hb_002025_380 0.0825849023 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
7 Hb_004282_010 0.0948998918 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
8 Hb_000956_070 0.1087883149 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
9 Hb_009767_050 0.1161827299 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
10 Hb_005144_080 0.1210742128 - - Serine carboxypeptidase, putative [Ricinus communis]
11 Hb_000014_080 0.1255187492 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
12 Hb_009615_030 0.1320309082 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_005731_070 0.1339073085 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000668_050 0.1405642075 - - phosphoglycerate mutase, putative [Ricinus communis]
15 Hb_007684_010 0.1419121806 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000011_370 0.1436333789 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
17 Hb_008727_040 0.1440762069 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001568_010 0.1443274863 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000749_120 0.1503388031 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
20 Hb_004357_030 0.1513464321 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_002818_170 Hb_002818_170 Hb_006277_030 Hb_006277_030 Hb_002818_170--Hb_006277_030 Hb_003189_010 Hb_003189_010 Hb_002818_170--Hb_003189_010 Hb_002097_180 Hb_002097_180 Hb_002818_170--Hb_002097_180 Hb_006501_100 Hb_006501_100 Hb_002818_170--Hb_006501_100 Hb_002025_380 Hb_002025_380 Hb_002818_170--Hb_002025_380 Hb_004282_010 Hb_004282_010 Hb_002818_170--Hb_004282_010 Hb_006277_030--Hb_002025_380 Hb_006277_030--Hb_003189_010 Hb_006277_030--Hb_006501_100 Hb_006277_030--Hb_004282_010 Hb_005144_080 Hb_005144_080 Hb_006277_030--Hb_005144_080 Hb_003189_010--Hb_002025_380 Hb_003189_010--Hb_002097_180 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_000668_050 Hb_000668_050 Hb_003189_010--Hb_000668_050 Hb_002097_180--Hb_002025_380 Hb_002097_180--Hb_006501_100 Hb_002097_180--Hb_006277_030 Hb_009615_030 Hb_009615_030 Hb_002097_180--Hb_009615_030 Hb_006501_100--Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_006501_100--Hb_000956_070 Hb_000014_080 Hb_000014_080 Hb_006501_100--Hb_000014_080 Hb_006501_100--Hb_002025_380 Hb_002025_380--Hb_005144_080 Hb_004282_010--Hb_000956_070 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0372953 1.11464 7.58565 19.108 0 0.0527076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042364 0.016667 0 14.8983 3.84562

CAGE analysis