Hb_002820_030

Information

Type -
Description -
Location Contig2820: 17527-20455
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15780g
description POPTRDRAFT_559223; hypothetical protein
nr
ID XP_012078216.1
description PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12080 PE=4 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29535: 17570-20524
cDNA
(Sanger)
(ID:Location)		 047_J12.ab1: 18192-20527

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_030 0.0 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
2 Hb_000738_020 0.0692309855 - - zinc finger protein, putative [Ricinus communis]
3 Hb_011457_150 0.0782065629 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
4 Hb_012239_020 0.0789326804 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
5 Hb_000424_060 0.0791925553 - - PREDICTED: myosin-15 [Jatropha curcas]
6 Hb_000010_110 0.0880513462 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
7 Hb_000069_380 0.0884302659 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
8 Hb_000331_680 0.0910493066 - - Protein bem46, putative [Ricinus communis]
9 Hb_062226_130 0.0918296806 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
10 Hb_001953_070 0.0925809778 - - PREDICTED: RNA pseudouridine synthase 7 isoform X2 [Jatropha curcas]
11 Hb_006059_040 0.0933320764 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
12 Hb_000176_020 0.0938721196 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
13 Hb_000869_080 0.0943338256 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
14 Hb_000886_050 0.0958189803 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
15 Hb_000522_150 0.095943081 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
16 Hb_006588_210 0.0965388281 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
17 Hb_004837_180 0.0974325895 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_003142_030 0.098191335 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
19 Hb_000484_130 0.0982431956 - - splicing factor, putative [Ricinus communis]
20 Hb_003849_110 0.0983424098 - - hypothetical protein JCGZ_17842 [Jatropha curcas]

Gene co-expression network

sample Hb_002820_030 Hb_002820_030 Hb_000738_020 Hb_000738_020 Hb_002820_030--Hb_000738_020 Hb_011457_150 Hb_011457_150 Hb_002820_030--Hb_011457_150 Hb_012239_020 Hb_012239_020 Hb_002820_030--Hb_012239_020 Hb_000424_060 Hb_000424_060 Hb_002820_030--Hb_000424_060 Hb_000010_110 Hb_000010_110 Hb_002820_030--Hb_000010_110 Hb_000069_380 Hb_000069_380 Hb_002820_030--Hb_000069_380 Hb_062226_130 Hb_062226_130 Hb_000738_020--Hb_062226_130 Hb_000738_020--Hb_012239_020 Hb_002073_200 Hb_002073_200 Hb_000738_020--Hb_002073_200 Hb_005162_090 Hb_005162_090 Hb_000738_020--Hb_005162_090 Hb_003849_110 Hb_003849_110 Hb_000738_020--Hb_003849_110 Hb_000869_080 Hb_000869_080 Hb_000738_020--Hb_000869_080 Hb_011457_150--Hb_000424_060 Hb_011457_150--Hb_000010_110 Hb_011457_150--Hb_000069_380 Hb_004586_300 Hb_004586_300 Hb_011457_150--Hb_004586_300 Hb_002893_040 Hb_002893_040 Hb_011457_150--Hb_002893_040 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_000086_420 Hb_000086_420 Hb_012239_020--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_000327_140 Hb_000327_140 Hb_012239_020--Hb_000327_140 Hb_003142_030 Hb_003142_030 Hb_000424_060--Hb_003142_030 Hb_000181_090 Hb_000181_090 Hb_000424_060--Hb_000181_090 Hb_001951_200 Hb_001951_200 Hb_000424_060--Hb_001951_200 Hb_007533_010 Hb_007533_010 Hb_000424_060--Hb_007533_010 Hb_000424_060--Hb_000010_110 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_006059_040 Hb_006059_040 Hb_000069_380--Hb_006059_040 Hb_000708_030 Hb_000708_030 Hb_000069_380--Hb_000708_030 Hb_000699_030 Hb_000699_030 Hb_000069_380--Hb_000699_030 Hb_001225_040 Hb_001225_040 Hb_000069_380--Hb_001225_040 Hb_010368_010 Hb_010368_010 Hb_000069_380--Hb_010368_010 Hb_001699_220 Hb_001699_220 Hb_000069_380--Hb_001699_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0009 19.3079 19.0098 11.5322 7.05441 8.04245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6286 14.1128 9.70529 9.92331 10.7341

CAGE analysis