Hb_002820_040

Information

Type -
Description -
Location Contig2820: 22830-28159
Sequence    

Annotation

kegg
ID rcu:RCOM_1190860
description hypothetical protein
nr
ID XP_002516334.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1190860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29536: 24782-28200 , PASA_asmbl_29537: 26120-26357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000318_140 0.0633746054 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
3 Hb_002725_070 0.0665863494 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
4 Hb_006913_040 0.0696917518 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
5 Hb_000078_100 0.0719310486 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
6 Hb_007416_310 0.0728127816 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
7 Hb_000645_150 0.0767287174 - - zinc finger protein, putative [Ricinus communis]
8 Hb_002883_010 0.0772602933 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
9 Hb_002235_320 0.079007312 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
10 Hb_000814_090 0.0820793456 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000076_080 0.0839258774 - - PREDICTED: protein MOS2 [Jatropha curcas]
12 Hb_000317_440 0.0839313234 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
13 Hb_000172_550 0.0839963438 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
14 Hb_018663_020 0.0840696613 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
15 Hb_000631_150 0.0864563133 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
16 Hb_001019_170 0.0865026413 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
17 Hb_002097_090 0.0875380068 - - Splicing factor 3A subunit, putative [Ricinus communis]
18 Hb_025557_020 0.0875773889 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
19 Hb_001829_010 0.0878518906 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
20 Hb_000239_070 0.0882038108 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002820_040 Hb_002820_040 Hb_000318_140 Hb_000318_140 Hb_002820_040--Hb_000318_140 Hb_002725_070 Hb_002725_070 Hb_002820_040--Hb_002725_070 Hb_006913_040 Hb_006913_040 Hb_002820_040--Hb_006913_040 Hb_000078_100 Hb_000078_100 Hb_002820_040--Hb_000078_100 Hb_007416_310 Hb_007416_310 Hb_002820_040--Hb_007416_310 Hb_000645_150 Hb_000645_150 Hb_002820_040--Hb_000645_150 Hb_025557_020 Hb_025557_020 Hb_000318_140--Hb_025557_020 Hb_018663_020 Hb_018663_020 Hb_000318_140--Hb_018663_020 Hb_000631_150 Hb_000631_150 Hb_000318_140--Hb_000631_150 Hb_000035_400 Hb_000035_400 Hb_000318_140--Hb_000035_400 Hb_009615_110 Hb_009615_110 Hb_000318_140--Hb_009615_110 Hb_005295_040 Hb_005295_040 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_001019_170 Hb_001019_170 Hb_006913_040--Hb_001019_170 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_000078_100--Hb_117950_020 Hb_004608_020 Hb_004608_020 Hb_000078_100--Hb_004608_020 Hb_000078_100--Hb_000631_150 Hb_005635_010 Hb_005635_010 Hb_000078_100--Hb_005635_010 Hb_002235_320 Hb_002235_320 Hb_007416_310--Hb_002235_320 Hb_007416_310--Hb_001019_170 Hb_002652_040 Hb_002652_040 Hb_007416_310--Hb_002652_040 Hb_007416_310--Hb_002725_070 Hb_000331_190 Hb_000331_190 Hb_007416_310--Hb_000331_190 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_000645_150--Hb_002097_090 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_000645_150--Hb_001829_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.4124 33.6171 11.7392 8.63966 67.5289 79.0461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.5455 20.4772 17.3194 27.8897 9.31429

CAGE analysis