Hb_002820_050

Information

Type -
Description -
Location Contig2820: 28202-39710
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011984mg
description hypothetical protein
nr
ID XP_012078214.1
description PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
swissprot
ID Q641Z5
description Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1
trembl
ID A0A067K996
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12078 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cation transport regulator-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29538: 28196-39720 , PASA_asmbl_29539: 28196-39720 , PASA_asmbl_29540: 28203-31240 , PASA_asmbl_29541: 28203-31240 , PASA_asmbl_29542: 28325-31268 , PASA_asmbl_29543: 28325-39685
cDNA
(Sanger)
(ID:Location)		 004_K04.ab1: 28231-39720 , 009_P01.ab1: 28292-39720 , 030_L09.ab1: 28325-39685 , 040_M07.ab1: 28290-39720

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_050 0.0 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
2 Hb_004453_130 0.0393205093 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
3 Hb_005730_120 0.0735520885 - - PREDICTED: protein WHI4 [Jatropha curcas]
4 Hb_022132_050 0.0774829139 - - GTP binding protein, putative [Ricinus communis]
5 Hb_007885_060 0.0787106435 - - replication factor C 40 kDa family protein [Populus trichocarpa]
6 Hb_002601_110 0.0791586572 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
7 Hb_002876_240 0.0794443507 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Jatropha curcas]
8 Hb_000976_120 0.0800647438 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
9 Hb_001472_100 0.0814404622 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
10 Hb_001922_170 0.0855405652 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
11 Hb_000465_090 0.0858067 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
12 Hb_000649_230 0.0858168836 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
13 Hb_000094_330 0.0861597472 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
14 Hb_003848_040 0.0861994485 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
15 Hb_001599_040 0.0866710073 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
16 Hb_146673_010 0.08739026 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
17 Hb_012395_230 0.0875691929 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_000049_140 0.0879743257 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
19 Hb_002311_180 0.0903352932 - - drought-responsive family protein [Populus trichocarpa]
20 Hb_001579_270 0.0914798566 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002820_050 Hb_002820_050 Hb_004453_130 Hb_004453_130 Hb_002820_050--Hb_004453_130 Hb_005730_120 Hb_005730_120 Hb_002820_050--Hb_005730_120 Hb_022132_050 Hb_022132_050 Hb_002820_050--Hb_022132_050 Hb_007885_060 Hb_007885_060 Hb_002820_050--Hb_007885_060 Hb_002601_110 Hb_002601_110 Hb_002820_050--Hb_002601_110 Hb_002876_240 Hb_002876_240 Hb_002820_050--Hb_002876_240 Hb_004453_130--Hb_005730_120 Hb_000049_140 Hb_000049_140 Hb_004453_130--Hb_000049_140 Hb_001599_040 Hb_001599_040 Hb_004453_130--Hb_001599_040 Hb_005271_220 Hb_005271_220 Hb_004453_130--Hb_005271_220 Hb_007423_040 Hb_007423_040 Hb_004453_130--Hb_007423_040 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_005730_120--Hb_001599_040 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_073973_130 Hb_073973_130 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_027428_010 Hb_027428_010 Hb_022132_050--Hb_027428_010 Hb_000181_090 Hb_000181_090 Hb_007885_060--Hb_000181_090 Hb_007885_060--Hb_002311_180 Hb_007885_060--Hb_004453_130 Hb_002299_030 Hb_002299_030 Hb_007885_060--Hb_002299_030 Hb_007533_010 Hb_007533_010 Hb_007885_060--Hb_007533_010 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_000111_380 Hb_000111_380 Hb_002601_110--Hb_000111_380 Hb_004108_070 Hb_004108_070 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_000094_330 Hb_000094_330 Hb_002876_240--Hb_000094_330 Hb_002820_110 Hb_002820_110 Hb_002876_240--Hb_002820_110 Hb_002876_240--Hb_004453_130 Hb_146673_010 Hb_146673_010 Hb_002876_240--Hb_146673_010 Hb_000529_030 Hb_000529_030 Hb_002876_240--Hb_000529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2755 14.1486 34.5966 23.5163 23.6357 28.6845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.7872 33.0913 13.6024 17.7367 19.7146

CAGE analysis