Hb_002820_120

Information

Type transcription factor
Description TF Family: ERF
Location Contig2820: 92889-93578
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08610g
description AP2 domain-containing transcription factor family protein
nr
ID XP_006386376.1
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9SFE4
description Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1
trembl
ID A9PLA6
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=RAP2L16 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf014-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_120 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_009252_120 0.1589152572 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006816_160 0.1612611315 - - hypothetical protein RCOM_1434920 [Ricinus communis]
4 Hb_035006_010 0.1907327337 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
5 Hb_001481_110 0.1967077612 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
6 Hb_005687_060 0.1973354541 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
7 Hb_001059_050 0.2066873542 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
8 Hb_000000_280 0.2071276635 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008725_190 0.2086282883 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
10 Hb_001999_240 0.2086393622 - - PREDICTED: josephin-like protein [Populus euphratica]
11 Hb_151616_010 0.2097859918 - - -
12 Hb_000286_210 0.2124425487 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
13 Hb_001454_360 0.2145172369 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
14 Hb_021443_020 0.216567586 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
15 Hb_007304_100 0.2176952263 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
16 Hb_002639_120 0.217907135 - - unnamed protein product [Vitis vinifera]
17 Hb_000661_010 0.2194130569 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
18 Hb_000369_050 0.2198801814 - - Ankyrin repeat family protein, putative [Theobroma cacao]
19 Hb_003800_010 0.2245456597 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
20 Hb_006550_010 0.2250648325 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002820_120 Hb_002820_120 Hb_009252_120 Hb_009252_120 Hb_002820_120--Hb_009252_120 Hb_006816_160 Hb_006816_160 Hb_002820_120--Hb_006816_160 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_009252_120--Hb_006816_160 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_000445_010 Hb_000445_010 Hb_006816_160--Hb_000445_010 Hb_021443_020 Hb_021443_020 Hb_035006_010--Hb_021443_020 Hb_007313_050 Hb_007313_050 Hb_035006_010--Hb_007313_050 Hb_003939_090 Hb_003939_090 Hb_035006_010--Hb_003939_090 Hb_000286_210 Hb_000286_210 Hb_035006_010--Hb_000286_210 Hb_005900_020 Hb_005900_020 Hb_035006_010--Hb_005900_020 Hb_035006_010--Hb_001059_050 Hb_001481_110--Hb_005687_060 Hb_000369_050 Hb_000369_050 Hb_001481_110--Hb_000369_050 Hb_001610_050 Hb_001610_050 Hb_001481_110--Hb_001610_050 Hb_006816_540 Hb_006816_540 Hb_001481_110--Hb_006816_540 Hb_007304_100 Hb_007304_100 Hb_001481_110--Hb_007304_100 Hb_000987_080 Hb_000987_080 Hb_001481_110--Hb_000987_080 Hb_005687_060--Hb_000369_050 Hb_002639_120 Hb_002639_120 Hb_005687_060--Hb_002639_120 Hb_005687_060--Hb_007304_100 Hb_000702_040 Hb_000702_040 Hb_005687_060--Hb_000702_040 Hb_005687_060--Hb_001610_050 Hb_001059_050--Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_001059_050--Hb_151616_010 Hb_001059_050--Hb_021443_020 Hb_132517_010 Hb_132517_010 Hb_001059_050--Hb_132517_010 Hb_001213_080 Hb_001213_080 Hb_001059_050--Hb_001213_080 Hb_001059_050--Hb_007313_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.765933 0.0557356 0.786703 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0825462 0.0648912 0 0.132097 0

CAGE analysis