Hb_002821_010

Information

Type -
Description -
Location Contig2821: 3992-4375
Sequence    

Annotation

kegg
ID tcc:TCM_004640
description Nucleolar protein 16
nr
ID XP_012082742.1
description PREDICTED: nucleolar protein 16 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13917 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nucleolar protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29561: 4122-4369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002821_010 0.0 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
2 Hb_120221_010 0.1370244654 - - -
3 Hb_000381_080 0.1415217915 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
4 Hb_084934_010 0.1432193872 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
5 Hb_027472_090 0.1443237786 - - -
6 Hb_170305_020 0.1477744121 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
7 Hb_000366_100 0.1503320448 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
8 Hb_023675_010 0.1523165714 - - -
9 Hb_036369_010 0.1534257681 - - -
10 Hb_003398_060 0.1561019861 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_004070_030 0.1593187478 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000331_310 0.1606502235 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
13 Hb_048197_010 0.1661416795 - - -
14 Hb_077562_040 0.1683441355 - - hypothetical protein JCGZ_24573 [Jatropha curcas]
15 Hb_002918_280 0.1714517427 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
16 Hb_073973_110 0.1769919683 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
17 Hb_003746_060 0.1772425018 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
18 Hb_000442_100 0.1774357502 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
19 Hb_000617_320 0.1774671293 - - 40S ribosomal protein S21B [Hevea brasiliensis]
20 Hb_005690_020 0.1777502993 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]

Gene co-expression network

sample Hb_002821_010 Hb_002821_010 Hb_120221_010 Hb_120221_010 Hb_002821_010--Hb_120221_010 Hb_000381_080 Hb_000381_080 Hb_002821_010--Hb_000381_080 Hb_084934_010 Hb_084934_010 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_170305_020 Hb_170305_020 Hb_002821_010--Hb_170305_020 Hb_000366_100 Hb_000366_100 Hb_002821_010--Hb_000366_100 Hb_000995_050 Hb_000995_050 Hb_120221_010--Hb_000995_050 Hb_011016_090 Hb_011016_090 Hb_120221_010--Hb_011016_090 Hb_002259_030 Hb_002259_030 Hb_120221_010--Hb_002259_030 Hb_120221_010--Hb_000381_080 Hb_001976_050 Hb_001976_050 Hb_120221_010--Hb_001976_050 Hb_000442_100 Hb_000442_100 Hb_000381_080--Hb_000442_100 Hb_000381_080--Hb_000995_050 Hb_000381_080--Hb_084934_010 Hb_000156_130 Hb_000156_130 Hb_000381_080--Hb_000156_130 Hb_011472_040 Hb_011472_040 Hb_084934_010--Hb_011472_040 Hb_006189_010 Hb_006189_010 Hb_084934_010--Hb_006189_010 Hb_003086_110 Hb_003086_110 Hb_084934_010--Hb_003086_110 Hb_157854_010 Hb_157854_010 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_030312_040 Hb_030312_040 Hb_084934_010--Hb_030312_040 Hb_012305_060 Hb_012305_060 Hb_027472_090--Hb_012305_060 Hb_002471_170 Hb_002471_170 Hb_027472_090--Hb_002471_170 Hb_004545_160 Hb_004545_160 Hb_027472_090--Hb_004545_160 Hb_003185_020 Hb_003185_020 Hb_027472_090--Hb_003185_020 Hb_007625_020 Hb_007625_020 Hb_027472_090--Hb_007625_020 Hb_000008_320 Hb_000008_320 Hb_027472_090--Hb_000008_320 Hb_036369_010 Hb_036369_010 Hb_170305_020--Hb_036369_010 Hb_170305_020--Hb_000366_100 Hb_000617_320 Hb_000617_320 Hb_170305_020--Hb_000617_320 Hb_007632_250 Hb_007632_250 Hb_170305_020--Hb_007632_250 Hb_001248_020 Hb_001248_020 Hb_170305_020--Hb_001248_020 Hb_012395_100 Hb_012395_100 Hb_170305_020--Hb_012395_100 Hb_000189_530 Hb_000189_530 Hb_000366_100--Hb_000189_530 Hb_000366_100--Hb_036369_010 Hb_023675_010 Hb_023675_010 Hb_000366_100--Hb_023675_010 Hb_000752_060 Hb_000752_060 Hb_000366_100--Hb_000752_060 Hb_000366_100--Hb_000617_320 Hb_008016_010 Hb_008016_010 Hb_000366_100--Hb_008016_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
186.81 101.241 6.4899 7.41893 152.676 339.704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
262.21 241.408 49.2679 23.2256 0.587405

CAGE analysis