Hb_002823_010

Information

Type -
Description -
Location Contig2823: 1378-15723
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29578: 8182-8972 , PASA_asmbl_29579: 10244-10444 , PASA_asmbl_29580: 13460-13803 , PASA_asmbl_29581: 13981-32001 , PASA_asmbl_29582: 14880-30242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002823_010 0.0 - - -
2 Hb_001865_070 0.1103505032 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
3 Hb_000183_030 0.1146321111 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
4 Hb_004449_080 0.1168657914 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
5 Hb_004705_020 0.1207939345 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
6 Hb_000574_530 0.1242660432 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
7 Hb_000599_190 0.1259088541 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
8 Hb_009898_010 0.1266604847 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
9 Hb_002316_160 0.1296373069 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
10 Hb_001217_050 0.1299346416 - - actin binding protein, putative [Ricinus communis]
11 Hb_002780_010 0.1304612452 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
12 Hb_071130_010 0.1315771966 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
13 Hb_001227_080 0.1326463934 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_007632_010 0.1329634053 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
15 Hb_000028_390 0.1331015963 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
16 Hb_007441_160 0.133411818 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000720_130 0.1347362211 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
18 Hb_185830_070 0.1351478185 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
19 Hb_012725_060 0.1353351413 - - protein binding protein, putative [Ricinus communis]
20 Hb_000340_490 0.1358663755 - - PREDICTED: ankyrin-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002823_010 Hb_002823_010 Hb_001865_070 Hb_001865_070 Hb_002823_010--Hb_001865_070 Hb_000183_030 Hb_000183_030 Hb_002823_010--Hb_000183_030 Hb_004449_080 Hb_004449_080 Hb_002823_010--Hb_004449_080 Hb_004705_020 Hb_004705_020 Hb_002823_010--Hb_004705_020 Hb_000574_530 Hb_000574_530 Hb_002823_010--Hb_000574_530 Hb_000599_190 Hb_000599_190 Hb_002823_010--Hb_000599_190 Hb_002686_090 Hb_002686_090 Hb_001865_070--Hb_002686_090 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_000672_040 Hb_000672_040 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001157_240 Hb_001157_240 Hb_001865_070--Hb_001157_240 Hb_000484_010 Hb_000484_010 Hb_000183_030--Hb_000484_010 Hb_000392_160 Hb_000392_160 Hb_000183_030--Hb_000392_160 Hb_000941_150 Hb_000941_150 Hb_000183_030--Hb_000941_150 Hb_000183_030--Hb_001865_070 Hb_002025_030 Hb_002025_030 Hb_000183_030--Hb_002025_030 Hb_015292_060 Hb_015292_060 Hb_000183_030--Hb_015292_060 Hb_000028_390 Hb_000028_390 Hb_004449_080--Hb_000028_390 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_006909_010 Hb_006909_010 Hb_004449_080--Hb_006909_010 Hb_164898_010 Hb_164898_010 Hb_004449_080--Hb_164898_010 Hb_003294_090 Hb_003294_090 Hb_004449_080--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_004449_080--Hb_019337_020 Hb_001628_070 Hb_001628_070 Hb_004705_020--Hb_001628_070 Hb_006531_020 Hb_006531_020 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_000024_040 Hb_000024_040 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_004705_020--Hb_005977_070 Hb_007632_010 Hb_007632_010 Hb_000574_530--Hb_007632_010 Hb_001124_050 Hb_001124_050 Hb_000574_530--Hb_001124_050 Hb_171554_040 Hb_171554_040 Hb_000574_530--Hb_171554_040 Hb_000574_530--Hb_006531_020 Hb_009486_090 Hb_009486_090 Hb_000574_530--Hb_009486_090 Hb_002521_020 Hb_002521_020 Hb_000574_530--Hb_002521_020 Hb_002007_160 Hb_002007_160 Hb_000599_190--Hb_002007_160 Hb_145022_010 Hb_145022_010 Hb_000599_190--Hb_145022_010 Hb_001104_190 Hb_001104_190 Hb_000599_190--Hb_001104_190 Hb_000599_190--Hb_004705_020 Hb_001217_050 Hb_001217_050 Hb_000599_190--Hb_001217_050 Hb_009767_080 Hb_009767_080 Hb_000599_190--Hb_009767_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167617 0.740388 0.0639801 0.403072 0.285312 0.369523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30782 0.24206 0.528644 0.645167 0.684792

CAGE analysis