Hb_002828_020

Information

Type -
Description -
Location Contig2828: 30163-32634
Sequence    

Annotation

kegg
ID rcu:RCOM_1474450
description protein binding protein, putative
nr
ID XP_002516645.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q0WPX7
description BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana GN=BAG2 PE=1 SV=1
trembl
ID B9RSC6
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1474450 PE=4 SV=1
Gene Ontology
ID GO:0051087
description bag family molecular chaperone regulator 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29586: 31183-32270 , PASA_asmbl_29587: 31251-31754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002828_020 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001500_110 0.0691859182 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_008120_010 0.0809465421 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
4 Hb_002876_320 0.0840893261 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
5 Hb_001677_080 0.0868331257 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_001492_020 0.0919131076 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
7 Hb_000683_070 0.0924274356 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
8 Hb_005797_010 0.0937291327 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
9 Hb_001454_130 0.0938042522 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
10 Hb_001018_130 0.0941802974 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
11 Hb_009049_020 0.0957786268 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
12 Hb_000146_050 0.0959054481 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
13 Hb_000120_060 0.0974120791 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
14 Hb_000009_400 0.0989414012 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
15 Hb_000617_100 0.0998106128 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
16 Hb_000083_250 0.0998774235 - - ring finger protein, putative [Ricinus communis]
17 Hb_001882_050 0.1022685529 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
18 Hb_150986_010 0.1024230196 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000982_060 0.1029089597 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_005503_040 0.1041495241 - - PREDICTED: AMP deaminase [Jatropha curcas]

Gene co-expression network

sample Hb_002828_020 Hb_002828_020 Hb_001500_110 Hb_001500_110 Hb_002828_020--Hb_001500_110 Hb_008120_010 Hb_008120_010 Hb_002828_020--Hb_008120_010 Hb_002876_320 Hb_002876_320 Hb_002828_020--Hb_002876_320 Hb_001677_080 Hb_001677_080 Hb_002828_020--Hb_001677_080 Hb_001492_020 Hb_001492_020 Hb_002828_020--Hb_001492_020 Hb_000683_070 Hb_000683_070 Hb_002828_020--Hb_000683_070 Hb_009049_020 Hb_009049_020 Hb_001500_110--Hb_009049_020 Hb_001500_110--Hb_002876_320 Hb_029866_100 Hb_029866_100 Hb_001500_110--Hb_029866_100 Hb_012322_020 Hb_012322_020 Hb_001500_110--Hb_012322_020 Hb_000617_100 Hb_000617_100 Hb_001500_110--Hb_000617_100 Hb_011671_040 Hb_011671_040 Hb_008120_010--Hb_011671_040 Hb_008120_010--Hb_009049_020 Hb_000107_200 Hb_000107_200 Hb_008120_010--Hb_000107_200 Hb_002445_120 Hb_002445_120 Hb_008120_010--Hb_002445_120 Hb_007403_060 Hb_007403_060 Hb_008120_010--Hb_007403_060 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_000008_220 Hb_000008_220 Hb_002876_320--Hb_000008_220 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_000009_400 Hb_000009_400 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050 Hb_001862_140 Hb_001862_140 Hb_001677_080--Hb_001862_140 Hb_002391_290 Hb_002391_290 Hb_001677_080--Hb_002391_290 Hb_001677_080--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_001677_080--Hb_002235_170 Hb_012340_070 Hb_012340_070 Hb_001677_080--Hb_012340_070 Hb_001492_020--Hb_002235_170 Hb_002213_070 Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001314_010 Hb_001314_010 Hb_001492_020--Hb_001314_010 Hb_005503_040 Hb_005503_040 Hb_000683_070--Hb_005503_040 Hb_000683_070--Hb_000617_100 Hb_021409_040 Hb_021409_040 Hb_000683_070--Hb_021409_040 Hb_000366_120 Hb_000366_120 Hb_000683_070--Hb_000366_120 Hb_001369_130 Hb_001369_130 Hb_000683_070--Hb_001369_130 Hb_000982_060 Hb_000982_060 Hb_000683_070--Hb_000982_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8322 10.4428 9.60742 26.1958 16.4041 16.4232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4543 7.08608 12.0727 12.0799 9.93493

CAGE analysis