Hb_002830_010

Information

Type -
Description -
Location Contig2830: 8031-20500
Sequence    

Annotation

kegg
ID rcu:RCOM_0413410
description hypothetical protein
nr
ID XP_012087738.1
description PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
swissprot
ID A1L0Z4
description TBCC domain-containing protein 1 OS=Xenopus tropicalis GN=tbccd1 PE=2 SV=1
trembl
ID A0A067JL23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25513 PE=4 SV=1
Gene Ontology
ID GO:0003779
description tubulin binding cofactor c domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29608: 8264-20529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002830_010 0.0 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
2 Hb_005582_040 0.0481340872 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
3 Hb_004030_080 0.0544680701 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
4 Hb_002071_070 0.0608879694 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
5 Hb_010515_020 0.0617120605 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
6 Hb_010068_080 0.0652890878 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
7 Hb_001304_110 0.0662636201 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
8 Hb_001716_040 0.0662736389 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
9 Hb_012632_010 0.0668932722 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
10 Hb_000640_040 0.0669469905 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_002272_030 0.0676464808 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
12 Hb_001635_120 0.0680860432 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
13 Hb_001404_110 0.0684221538 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
14 Hb_001481_060 0.0702314001 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
15 Hb_008948_020 0.0705948592 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
16 Hb_066920_030 0.0711903002 - - PREDICTED: adagio protein 1 [Jatropha curcas]
17 Hb_000856_040 0.0738792333 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
18 Hb_002890_130 0.0740345905 - - tip120, putative [Ricinus communis]
19 Hb_006452_120 0.0744225186 - - PREDICTED: protein FAM188A [Jatropha curcas]
20 Hb_020178_040 0.0749442257 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002830_010 Hb_002830_010 Hb_005582_040 Hb_005582_040 Hb_002830_010--Hb_005582_040 Hb_004030_080 Hb_004030_080 Hb_002830_010--Hb_004030_080 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_010515_020--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_010515_020--Hb_000574_450 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_010068_080--Hb_001304_110 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.8023 12.7303 10.2736 12.8442 7.63079 8.58728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.72872 8.13326 12.2391 10.9492 14.2697

CAGE analysis