Hb_002830_020

Information

Type -
Description -
Location Contig2830: 25013-28219
Sequence    

Annotation

kegg
ID rcu:RCOM_0413450
description protein translocase, putative
nr
ID XP_012087740.1
description PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID O48528
description Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
trembl
ID A0A067JYI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25515 PE=4 SV=1
Gene Ontology
ID GO:0005747
description outer envelope pore protein 16- chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29610: 25103-28447
cDNA
(Sanger)
(ID:Location)		 005_D10.ab1: 25522-28447 , 029_F16.ab1: 25640-28447

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002830_020 0.0 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_002431_050 0.0594954396 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
3 Hb_012022_120 0.0613092685 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
4 Hb_002864_050 0.0644871962 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
5 Hb_000201_120 0.0667987182 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
6 Hb_094608_010 0.0671385232 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
7 Hb_003581_150 0.0712425027 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
8 Hb_001016_030 0.0721054054 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_000699_160 0.0737685807 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
10 Hb_029584_060 0.0740270789 - - Grave disease carrier protein, putative [Ricinus communis]
11 Hb_010672_060 0.0758490801 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
12 Hb_001616_040 0.0778306358 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
13 Hb_000029_200 0.0779051459 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
14 Hb_003683_110 0.0794417824 - - JHL10I11.3 [Jatropha curcas]
15 Hb_007012_060 0.0803830679 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
16 Hb_005181_030 0.0808863042 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_010175_040 0.0809360852 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
18 Hb_001191_090 0.0814981369 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_000996_140 0.0816934998 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
20 Hb_143496_010 0.0817827691 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]

Gene co-expression network

sample Hb_002830_020 Hb_002830_020 Hb_002431_050 Hb_002431_050 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_000201_120 Hb_000201_120 Hb_002830_020--Hb_000201_120 Hb_094608_010 Hb_094608_010 Hb_002830_020--Hb_094608_010 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150 Hb_010672_060 Hb_010672_060 Hb_002431_050--Hb_010672_060 Hb_003893_050 Hb_003893_050 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_007416_020 Hb_007416_020 Hb_002431_050--Hb_007416_020 Hb_029584_060 Hb_029584_060 Hb_002431_050--Hb_029584_060 Hb_000505_140 Hb_000505_140 Hb_012022_120--Hb_000505_140 Hb_032202_090 Hb_032202_090 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_000029_200 Hb_000029_200 Hb_002864_050--Hb_000029_200 Hb_007416_030 Hb_007416_030 Hb_002864_050--Hb_007416_030 Hb_165132_010 Hb_165132_010 Hb_002864_050--Hb_165132_010 Hb_101705_030 Hb_101705_030 Hb_002864_050--Hb_101705_030 Hb_002874_190 Hb_002874_190 Hb_002864_050--Hb_002874_190 Hb_000201_120--Hb_003581_150 Hb_001016_030 Hb_001016_030 Hb_000201_120--Hb_001016_030 Hb_001616_040 Hb_001616_040 Hb_000201_120--Hb_001616_040 Hb_000840_030 Hb_000840_030 Hb_000201_120--Hb_000840_030 Hb_000574_480 Hb_000574_480 Hb_000201_120--Hb_000574_480 Hb_007576_170 Hb_007576_170 Hb_094608_010--Hb_007576_170 Hb_007012_060 Hb_007012_060 Hb_094608_010--Hb_007012_060 Hb_005181_030 Hb_005181_030 Hb_094608_010--Hb_005181_030 Hb_000877_020 Hb_000877_020 Hb_094608_010--Hb_000877_020 Hb_094608_010--Hb_101705_030 Hb_000103_320 Hb_000103_320 Hb_003581_150--Hb_000103_320 Hb_000934_250 Hb_000934_250 Hb_003581_150--Hb_000934_250 Hb_010175_040 Hb_010175_040 Hb_003581_150--Hb_010175_040 Hb_129204_030 Hb_129204_030 Hb_003581_150--Hb_129204_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8035 8.36288 21.4726 24.3738 25.1036 31.973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.6339 77.2965 40.8953 15.1572 13.794

CAGE analysis