Hb_002830_030

Information

Type -
Description -
Location Contig2830: 30038-39088
Sequence    

Annotation

kegg
ID rcu:RCOM_0413560
description hypothetical protein
nr
ID XP_012087741.1
description PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
swissprot
ID Q9FG23
description CDK5RAP3-like protein OS=Arabidopsis thaliana GN=At5g06830 PE=2 SV=2
trembl
ID A0A067JX72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25516 PE=4 SV=1
Gene Ontology
ID GO:0000079
description cdk5rap3-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29611: 30143-38990 , PASA_asmbl_29612: 30222-38990 , PASA_asmbl_29613: 31322-38990 , PASA_asmbl_29614: 34715-34881 , PASA_asmbl_29615: 36903-37099 , PASA_asmbl_29616: 30143-32929 , PASA_asmbl_29617: 31491-38990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002830_030 0.0 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
2 Hb_010422_060 0.0607601805 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
3 Hb_005779_060 0.0668522306 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
4 Hb_001009_270 0.0720061151 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
5 Hb_002110_150 0.0729666987 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
6 Hb_000876_070 0.073911451 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_000504_140 0.0739261757 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
8 Hb_001902_140 0.074844101 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
9 Hb_000003_250 0.0753729491 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_000175_460 0.0757080522 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_000465_160 0.0760610244 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
12 Hb_003058_190 0.0775619243 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
13 Hb_001799_210 0.0775656869 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
14 Hb_032202_190 0.0778714552 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
15 Hb_000016_250 0.0790965263 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
16 Hb_001726_020 0.0810389187 - - PREDICTED: endophilin-A1 [Jatropha curcas]
17 Hb_005463_100 0.082618938 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
18 Hb_000260_030 0.0829778883 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_000777_040 0.0833409111 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_000679_010 0.0833813127 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]

Gene co-expression network

sample Hb_002830_030 Hb_002830_030 Hb_010422_060 Hb_010422_060 Hb_002830_030--Hb_010422_060 Hb_005779_060 Hb_005779_060 Hb_002830_030--Hb_005779_060 Hb_001009_270 Hb_001009_270 Hb_002830_030--Hb_001009_270 Hb_002110_150 Hb_002110_150 Hb_002830_030--Hb_002110_150 Hb_000876_070 Hb_000876_070 Hb_002830_030--Hb_000876_070 Hb_000504_140 Hb_000504_140 Hb_002830_030--Hb_000504_140 Hb_001059_030 Hb_001059_030 Hb_010422_060--Hb_001059_030 Hb_010422_060--Hb_000504_140 Hb_000062_220 Hb_000062_220 Hb_010422_060--Hb_000062_220 Hb_010422_060--Hb_005779_060 Hb_004254_120 Hb_004254_120 Hb_010422_060--Hb_004254_120 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_005779_060--Hb_000062_220 Hb_005779_060--Hb_002110_150 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_032208_090 Hb_032208_090 Hb_001009_270--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_002110_150--Hb_002046_180 Hb_008725_260 Hb_008725_260 Hb_002110_150--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002110_150--Hb_005463_100 Hb_002110_150--Hb_000016_250 Hb_009767_110 Hb_009767_110 Hb_002110_150--Hb_009767_110 Hb_000876_070--Hb_002739_100 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_001758_100 Hb_001758_100 Hb_000504_140--Hb_001758_100 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000317_240 Hb_000317_240 Hb_000504_140--Hb_000317_240 Hb_000504_140--Hb_005618_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8112 10.4101 11.4914 10.3421 15.2698 12.8368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.815 15.8026 25.6585 11.9924 9.77821

CAGE analysis