Hb_002833_020

Information

Type desease resistance
Description Gene Name: LRR_4
Location Contig2833: 19852-35059
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29626: 19868-20042 , PASA_asmbl_29628: 21836-30998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002833_020 0.0 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_001008_110 0.0835592725 - - -
3 Hb_000417_280 0.0872463438 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000100_210 0.1036461397 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
5 Hb_000085_380 0.10692579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000120_310 0.1103743535 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
7 Hb_042202_020 0.1104058946 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
8 Hb_005880_010 0.1120697864 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
9 Hb_033234_010 0.1140530956 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
10 Hb_002003_040 0.1147455892 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
11 Hb_000261_320 0.1170181163 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_000139_510 0.1208713807 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
13 Hb_001522_040 0.1220283762 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_002660_040 0.1232731396 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
15 Hb_001268_300 0.1236827994 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000197_230 0.1237697659 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_001488_280 0.1270222735 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
18 Hb_001307_200 0.1282119947 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
19 Hb_000438_020 0.1307124812 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
20 Hb_002671_060 0.1316256544 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002833_020 Hb_002833_020 Hb_001008_110 Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_000085_380 Hb_000085_380 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_001008_110--Hb_000417_280 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_000417_280--Hb_032717_010 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_001268_300 Hb_001268_300 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_001522_040 Hb_001522_040 Hb_000100_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_000100_210--Hb_029748_020 Hb_000997_340 Hb_000997_340 Hb_000100_210--Hb_000997_340 Hb_023386_050 Hb_023386_050 Hb_000100_210--Hb_023386_050 Hb_002686_210 Hb_002686_210 Hb_000100_210--Hb_002686_210 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_001856_170 Hb_001856_170 Hb_000120_310--Hb_001856_170 Hb_001369_160 Hb_001369_160 Hb_000120_310--Hb_001369_160 Hb_001488_280 Hb_001488_280 Hb_000120_310--Hb_001488_280 Hb_001596_020 Hb_001596_020 Hb_000120_310--Hb_001596_020 Hb_004586_240 Hb_004586_240 Hb_000120_310--Hb_004586_240 Hb_042202_020--Hb_033234_010 Hb_042202_020--Hb_001268_300 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_042202_020--Hb_003142_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29043 14.0829 7.8725 10.4059 0.918356 2.13582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.526294 0.235514 0.390154 14.0698 8.60249

CAGE analysis