Hb_002835_020

Information

Type -
Description -
Location Contig2835: 12068-14162
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09140g
description POPTRDRAFT_355968; hypothetical protein
nr
ID XP_012079961.1
description PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
swissprot
ID P24465
description Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2
trembl
ID A0A067K7J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11389 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 71a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29629: 12029-14125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_020 0.0 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
2 Hb_039363_010 0.029330193 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_000563_060 0.0335369026 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
4 Hb_002553_170 0.0416604456 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
5 Hb_000388_160 0.0427797082 - - xyloglucan endo-1 family protein [Populus trichocarpa]
6 Hb_003334_080 0.045109729 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_001930_060 0.0514766276 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
8 Hb_153208_010 0.0522796533 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
9 Hb_109163_010 0.0547354243 - - polyphenol oxidase [Hevea brasiliensis]
10 Hb_004190_030 0.0551841806 - - unnamed protein product [Vitis vinifera]
11 Hb_000500_190 0.0558582323 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
12 Hb_001140_330 0.0560829548 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
13 Hb_003188_020 0.0574969147 - - chitinase, putative [Ricinus communis]
14 Hb_004267_050 0.0622544072 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
15 Hb_000229_080 0.06288579 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_000141_070 0.0639407205 - - l-lactate dehydrogenase, putative [Ricinus communis]
17 Hb_001301_020 0.0644999158 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
18 Hb_166232_010 0.0645195045 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
19 Hb_000563_080 0.0654050205 - - -
20 Hb_002944_020 0.0664794951 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_002835_020 Hb_002835_020 Hb_039363_010 Hb_039363_010 Hb_002835_020--Hb_039363_010 Hb_000563_060 Hb_000563_060 Hb_002835_020--Hb_000563_060 Hb_002553_170 Hb_002553_170 Hb_002835_020--Hb_002553_170 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_003334_080 Hb_003334_080 Hb_002835_020--Hb_003334_080 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_039363_010--Hb_000563_060 Hb_039363_010--Hb_000388_160 Hb_109163_010 Hb_109163_010 Hb_039363_010--Hb_109163_010 Hb_153208_010 Hb_153208_010 Hb_039363_010--Hb_153208_010 Hb_004190_030 Hb_004190_030 Hb_039363_010--Hb_004190_030 Hb_000563_060--Hb_004190_030 Hb_001140_330 Hb_001140_330 Hb_000563_060--Hb_001140_330 Hb_003119_110 Hb_003119_110 Hb_000563_060--Hb_003119_110 Hb_000563_060--Hb_153208_010 Hb_002553_170--Hb_001930_060 Hb_002553_170--Hb_003334_080 Hb_002553_170--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_002553_170--Hb_003188_020 Hb_000141_070 Hb_000141_070 Hb_002553_170--Hb_000141_070 Hb_000388_160--Hb_000563_060 Hb_000388_160--Hb_153208_010 Hb_000388_160--Hb_109163_010 Hb_000388_160--Hb_003334_080 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_009568_010 Hb_009568_010 Hb_003334_080--Hb_009568_010 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050 Hb_166232_010 Hb_166232_010 Hb_001930_060--Hb_166232_010 Hb_001930_060--Hb_003334_080 Hb_001301_020 Hb_001301_020 Hb_001930_060--Hb_001301_020 Hb_001930_060--Hb_009568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0380122 8.45862 3.05598 6.42809 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173787 0.0781347 0.258665 561.023 1.81159

CAGE analysis