Hb_002835_040

Information

Type -
Description -
Location Contig2835: 36456-42268
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09690g
description POPTRDRAFT_776169; quinolinate synthetase A-related family protein
nr
ID XP_012079962.1
description PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FGS4
description Quinolinate synthase, chloroplastic OS=Arabidopsis thaliana GN=QS PE=1 SV=1
trembl
ID A0A067KFH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11391 PE=4 SV=1
Gene Ontology
ID GO:0008047
description quinolinate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29630: 36767-42226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_040 0.0 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
2 Hb_004414_060 0.0639837049 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
3 Hb_005269_070 0.0683815959 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
4 Hb_004410_030 0.0805678811 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004619_030 0.0815119076 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
6 Hb_000915_260 0.0881322454 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
7 Hb_002271_030 0.0888698319 - - Vacuolar protein sorting protein, putative [Ricinus communis]
8 Hb_001141_020 0.0893722047 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
9 Hb_002044_150 0.0895102222 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
10 Hb_028089_010 0.0909591355 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
11 Hb_029879_010 0.0921128941 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
12 Hb_030736_100 0.0926733486 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000417_130 0.0927946537 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
14 Hb_000575_040 0.0930897264 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
15 Hb_000011_200 0.0940028697 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
16 Hb_001268_240 0.094443411 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
17 Hb_009545_080 0.0948637957 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
18 Hb_000329_320 0.0952320274 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
19 Hb_004369_020 0.0956041113 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
20 Hb_000137_090 0.0957283092 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]

Gene co-expression network

sample Hb_002835_040 Hb_002835_040 Hb_004414_060 Hb_004414_060 Hb_002835_040--Hb_004414_060 Hb_005269_070 Hb_005269_070 Hb_002835_040--Hb_005269_070 Hb_004410_030 Hb_004410_030 Hb_002835_040--Hb_004410_030 Hb_004619_030 Hb_004619_030 Hb_002835_040--Hb_004619_030 Hb_000915_260 Hb_000915_260 Hb_002835_040--Hb_000915_260 Hb_002271_030 Hb_002271_030 Hb_002835_040--Hb_002271_030 Hb_001632_040 Hb_001632_040 Hb_004414_060--Hb_001632_040 Hb_003964_070 Hb_003964_070 Hb_004414_060--Hb_003964_070 Hb_003163_020 Hb_003163_020 Hb_004414_060--Hb_003163_020 Hb_001493_030 Hb_001493_030 Hb_004414_060--Hb_001493_030 Hb_007317_110 Hb_007317_110 Hb_004414_060--Hb_007317_110 Hb_156279_020 Hb_156279_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_004410_030--Hb_002271_030 Hb_004410_030--Hb_004619_030 Hb_004619_030--Hb_003163_020 Hb_000347_070 Hb_000347_070 Hb_004619_030--Hb_000347_070 Hb_004619_030--Hb_000011_200 Hb_011930_160 Hb_011930_160 Hb_004619_030--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_004619_030--Hb_000617_180 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_002271_030--Hb_000011_200 Hb_002271_030--Hb_003025_110 Hb_002271_030--Hb_000225_040 Hb_030736_100 Hb_030736_100 Hb_002271_030--Hb_030736_100 Hb_002271_030--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.66953 2.31554 6.14215 5.00492 7.84234 8.20245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88064 6.62436 8.49478 8.62097 5.95002

CAGE analysis