Hb_002835_080

Information

Type -
Description -
Location Contig2835: 66834-71024
Sequence    

Annotation

kegg
ID rcu:RCOM_0868180
description 50S ribosomal protein L19, putative
nr
ID XP_012079968.1
description PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
swissprot
ID P82413
description 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2
trembl
ID A0A067KFH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11396 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29632: 67047-71001 , PASA_asmbl_29633: 67047-67999 , PASA_asmbl_29634: 68179-68361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_080 0.0 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
2 Hb_019280_040 0.052184142 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_148644_010 0.0567185724 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
4 Hb_002182_080 0.0604868252 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_000010_330 0.0640071956 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
6 Hb_000959_260 0.0646287057 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
7 Hb_007691_030 0.0680701577 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_010457_030 0.0689758563 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
9 Hb_007416_280 0.0694028174 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001242_060 0.0696996539 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
11 Hb_000035_320 0.0698380251 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
12 Hb_010504_020 0.070149664 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_001638_170 0.0702789707 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
14 Hb_000365_390 0.0711561036 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
15 Hb_002701_020 0.0731733936 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
16 Hb_000092_170 0.0734400863 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_020956_020 0.0735168406 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
18 Hb_002200_080 0.074570692 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
19 Hb_009557_070 0.0747041374 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000512_060 0.0757550958 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]

Gene co-expression network

sample Hb_002835_080 Hb_002835_080 Hb_019280_040 Hb_019280_040 Hb_002835_080--Hb_019280_040 Hb_148644_010 Hb_148644_010 Hb_002835_080--Hb_148644_010 Hb_002182_080 Hb_002182_080 Hb_002835_080--Hb_002182_080 Hb_000010_330 Hb_000010_330 Hb_002835_080--Hb_000010_330 Hb_000959_260 Hb_000959_260 Hb_002835_080--Hb_000959_260 Hb_007691_030 Hb_007691_030 Hb_002835_080--Hb_007691_030 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_000700_110 Hb_000700_110 Hb_148644_010--Hb_000700_110 Hb_004032_150 Hb_004032_150 Hb_148644_010--Hb_004032_150 Hb_002477_330 Hb_002477_330 Hb_148644_010--Hb_002477_330 Hb_000035_320 Hb_000035_320 Hb_148644_010--Hb_000035_320 Hb_003195_070 Hb_003195_070 Hb_148644_010--Hb_003195_070 Hb_001279_150 Hb_001279_150 Hb_002182_080--Hb_001279_150 Hb_000215_110 Hb_000215_110 Hb_002182_080--Hb_000215_110 Hb_002182_080--Hb_019280_040 Hb_008092_040 Hb_008092_040 Hb_002182_080--Hb_008092_040 Hb_003108_020 Hb_003108_020 Hb_002182_080--Hb_003108_020 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_000010_330--Hb_010457_030 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040 Hb_010504_020 Hb_010504_020 Hb_000959_260--Hb_010504_020 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_000959_260--Hb_002477_330 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4722 9.51728 6.83782 12.1298 12.3155 21.7295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9831 20.2012 17.05 9.3442 8.9576

CAGE analysis