Hb_002835_090

Information

Type -
Description -
Location Contig2835: 73632-75074
Sequence    

Annotation

kegg
ID gmx:100791320
description elongation factor Tu, chloroplastic-like
nr
ID P46280.1
description RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
swissprot
ID P46280
description Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1
trembl
ID K7KMT9
description Elongation factor Tu OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005730
description elongation factor chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29635: 73490-75480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_090 0.0 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
2 Hb_001377_060 0.1000071058 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
3 Hb_000029_330 0.1028503298 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
4 Hb_011900_020 0.104214974 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
5 Hb_000359_070 0.1102327897 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
6 Hb_007595_050 0.1113386697 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
7 Hb_000069_370 0.1194021484 - - -
8 Hb_000038_020 0.1298717677 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
9 Hb_001266_160 0.1299755448 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
10 Hb_156850_020 0.1309240649 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
11 Hb_006816_040 0.1321118971 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
12 Hb_000254_120 0.1344831768 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000035_340 0.1375217237 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000667_140 0.1381462508 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
15 Hb_000360_010 0.1394315673 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_003963_040 0.1397942822 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
17 Hb_004712_200 0.1430799698 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
18 Hb_004611_040 0.1449612755 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000966_040 0.1465541813 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
20 Hb_000193_220 0.1467185707 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002835_090 Hb_002835_090 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_011900_020 Hb_011900_020 Hb_002835_090--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_002835_090--Hb_000359_070 Hb_007595_050 Hb_007595_050 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_000254_120 Hb_000254_120 Hb_001377_060--Hb_000254_120 Hb_004712_200 Hb_004712_200 Hb_001377_060--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_001377_060--Hb_000193_220 Hb_010721_020 Hb_010721_020 Hb_001377_060--Hb_010721_020 Hb_001584_050 Hb_001584_050 Hb_001377_060--Hb_001584_050 Hb_001266_160 Hb_001266_160 Hb_000029_330--Hb_001266_160 Hb_000317_180 Hb_000317_180 Hb_000029_330--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_000029_330--Hb_134949_010 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_156850_020 Hb_156850_020 Hb_011900_020--Hb_156850_020 Hb_011900_020--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_010080_070 Hb_010080_070 Hb_011900_020--Hb_010080_070 Hb_000359_070--Hb_156850_020 Hb_000359_070--Hb_001266_160 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_003861_150 Hb_003861_150 Hb_007595_050--Hb_003861_150 Hb_007595_020 Hb_007595_020 Hb_007595_050--Hb_007595_020 Hb_005228_060 Hb_005228_060 Hb_007595_050--Hb_005228_060 Hb_007595_050--Hb_011900_020 Hb_007595_050--Hb_156850_020 Hb_000069_370--Hb_000038_020 Hb_000069_370--Hb_000029_330 Hb_000667_140 Hb_000667_140 Hb_000069_370--Hb_000667_140 Hb_000069_370--Hb_001266_160 Hb_005332_150 Hb_005332_150 Hb_000069_370--Hb_005332_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.6487 52.5734 250.046 116.137 41.7055 42.5792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5901 12.8975 15.9532 26.7193 965.936

CAGE analysis