Hb_002835_120

Information

Type -
Description -
Location Contig2835: 92016-92414
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09570g
description POPTRDRAFT_776160; hypothetical protein
nr
ID XP_012079977.1
description PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11403 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29639: 91735-92453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_120 0.0 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
2 Hb_005736_110 0.0963357685 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
3 Hb_001141_010 0.0992207769 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
4 Hb_002837_150 0.1014315112 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
5 Hb_000638_110 0.1018620853 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
6 Hb_145975_010 0.1067067946 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000349_280 0.1100372965 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006618_100 0.1110067201 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
9 Hb_008406_170 0.1127152729 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_103632_010 0.1137011639 - - triacylglycerol lipase, putative [Ricinus communis]
11 Hb_032260_040 0.1149192592 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012217_010 0.1161902078 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
13 Hb_001269_430 0.1194392725 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
14 Hb_000245_070 0.1196749242 - - PREDICTED: uncharacterized protein LOC105141276 [Populus euphratica]
15 Hb_001269_440 0.1214886729 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
16 Hb_000201_050 0.1225536774 - - -
17 Hb_011930_090 0.1232829086 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
18 Hb_024066_030 0.1259019666 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
19 Hb_004617_010 0.1284698824 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
20 Hb_007441_100 0.1307871122 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]

Gene co-expression network

sample Hb_002835_120 Hb_002835_120 Hb_005736_110 Hb_005736_110 Hb_002835_120--Hb_005736_110 Hb_001141_010 Hb_001141_010 Hb_002835_120--Hb_001141_010 Hb_002837_150 Hb_002837_150 Hb_002835_120--Hb_002837_150 Hb_000638_110 Hb_000638_110 Hb_002835_120--Hb_000638_110 Hb_145975_010 Hb_145975_010 Hb_002835_120--Hb_145975_010 Hb_000349_280 Hb_000349_280 Hb_002835_120--Hb_000349_280 Hb_006618_100 Hb_006618_100 Hb_005736_110--Hb_006618_100 Hb_005736_110--Hb_145975_010 Hb_011344_050 Hb_011344_050 Hb_005736_110--Hb_011344_050 Hb_103632_010 Hb_103632_010 Hb_005736_110--Hb_103632_010 Hb_000367_320 Hb_000367_320 Hb_005736_110--Hb_000367_320 Hb_001141_010--Hb_002837_150 Hb_001141_010--Hb_103632_010 Hb_001141_010--Hb_000638_110 Hb_004757_040 Hb_004757_040 Hb_001141_010--Hb_004757_040 Hb_001269_440 Hb_001269_440 Hb_001141_010--Hb_001269_440 Hb_002837_150--Hb_103632_010 Hb_002837_150--Hb_001269_440 Hb_003212_030 Hb_003212_030 Hb_002837_150--Hb_003212_030 Hb_004617_010 Hb_004617_010 Hb_002837_150--Hb_004617_010 Hb_000638_110--Hb_103632_010 Hb_000638_110--Hb_004757_040 Hb_000638_110--Hb_002837_150 Hb_001322_010 Hb_001322_010 Hb_000638_110--Hb_001322_010 Hb_145975_010--Hb_006618_100 Hb_004757_010 Hb_004757_010 Hb_145975_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_145975_010--Hb_001343_060 Hb_027411_030 Hb_027411_030 Hb_145975_010--Hb_027411_030 Hb_001141_430 Hb_001141_430 Hb_145975_010--Hb_001141_430 Hb_001269_430 Hb_001269_430 Hb_145975_010--Hb_001269_430 Hb_000349_280--Hb_006618_100 Hb_000422_060 Hb_000422_060 Hb_000349_280--Hb_000422_060 Hb_010217_020 Hb_010217_020 Hb_000349_280--Hb_010217_020 Hb_012217_010 Hb_012217_010 Hb_000349_280--Hb_012217_010 Hb_032260_040 Hb_032260_040 Hb_000349_280--Hb_032260_040 Hb_007441_100 Hb_007441_100 Hb_000349_280--Hb_007441_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80379 130.725 7.60065 693.239 3.42237 7.18586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20143 0.314566 0 15.4405 61.3168

CAGE analysis