Hb_002835_170

Information

Type -
Description -
Location Contig2835: 121776-127044
Sequence    

Annotation

kegg
ID rcu:RCOM_1508680
description zinc ion binding protein, putative
nr
ID XP_012079980.1
description PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
swissprot
ID Q5BL31
description Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1
trembl
ID A0A067KFI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11406 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29641: 121780-126866
cDNA
(Sanger)
(ID:Location)		 022_P22.ab1: 124460-126857 , 029_L19.ab1: 124571-126866 , 032_O14.ab1: 124456-126842 , 035_P14.ab1: 124424-126857 , 036_A19.ab1: 124421-126866 , 039_B20.ab1: 124472-126866 , 041_F18.ab1: 124379-126860 , 049_D06.ab1: 124491-126859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_170 0.0 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
2 Hb_011457_100 0.0636628772 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001478_050 0.0819300351 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
4 Hb_001102_010 0.0883312322 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
5 Hb_002301_320 0.094542589 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
6 Hb_116349_150 0.0975412247 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
7 Hb_001606_070 0.1062025186 - - fimbrin, putative [Ricinus communis]
8 Hb_000571_070 0.1076526794 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
9 Hb_003497_030 0.1101757434 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_027751_020 0.1112066088 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
11 Hb_002609_260 0.1166775334 - - CCCH-type zinc finger protein [Hevea brasiliensis]
12 Hb_006787_040 0.1173815869 - - polyadenylate-binding protein, putative [Ricinus communis]
13 Hb_000849_040 0.118082238 - - transcription factor, putative [Ricinus communis]
14 Hb_001488_100 0.1205995932 - - -
15 Hb_001191_100 0.1220263329 - - F-actin capping protein beta subunit [Populus trichocarpa]
16 Hb_000789_190 0.1237079976 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
17 Hb_005455_070 0.1248555185 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
18 Hb_000264_190 0.12691265 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
19 Hb_002928_110 0.12900305 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
20 Hb_000563_540 0.1290925054 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]

Gene co-expression network

sample Hb_002835_170 Hb_002835_170 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_002301_320 Hb_002301_320 Hb_002835_170--Hb_002301_320 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_011457_100--Hb_001102_010 Hb_027751_020 Hb_027751_020 Hb_011457_100--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_011457_100--Hb_000563_540 Hb_002609_260 Hb_002609_260 Hb_011457_100--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_011457_100--Hb_000264_190 Hb_002291_030 Hb_002291_030 Hb_001478_050--Hb_002291_030 Hb_005455_070 Hb_005455_070 Hb_001478_050--Hb_005455_070 Hb_002326_030 Hb_002326_030 Hb_001478_050--Hb_002326_030 Hb_008695_190 Hb_008695_190 Hb_001478_050--Hb_008695_190 Hb_007229_060 Hb_007229_060 Hb_001478_050--Hb_007229_060 Hb_000078_030 Hb_000078_030 Hb_001102_010--Hb_000078_030 Hb_000787_070 Hb_000787_070 Hb_001102_010--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_001102_010--Hb_005016_130 Hb_000193_230 Hb_000193_230 Hb_001102_010--Hb_000193_230 Hb_001488_100 Hb_001488_100 Hb_002301_320--Hb_001488_100 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_103873_010 Hb_103873_010 Hb_002301_320--Hb_103873_010 Hb_002248_050 Hb_002248_050 Hb_002301_320--Hb_002248_050 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_006787_040 Hb_006787_040 Hb_116349_150--Hb_006787_040 Hb_116349_150--Hb_000193_230 Hb_116349_150--Hb_001102_010 Hb_029223_030 Hb_029223_030 Hb_116349_150--Hb_029223_030 Hb_116349_150--Hb_000078_030 Hb_000849_040 Hb_000849_040 Hb_001606_070--Hb_000849_040 Hb_005779_100 Hb_005779_100 Hb_001606_070--Hb_005779_100 Hb_003030_080 Hb_003030_080 Hb_001606_070--Hb_003030_080 Hb_000427_110 Hb_000427_110 Hb_001606_070--Hb_000427_110 Hb_001606_070--Hb_006787_040 Hb_000861_040 Hb_000861_040 Hb_001606_070--Hb_000861_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1937.84 59.5323 21.9598 62.3422 1122.62 1309.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1243.34 1544 2070.33 190.839 50.2415

CAGE analysis