Hb_002835_230

Information

Type -
Description -
Location Contig2835: 202906-206353
Sequence    

Annotation

kegg
ID rcu:RCOM_1508820
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002511324.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8VYG9
description Plant intracellular Ras-group-related LRR protein 9 OS=Arabidopsis thaliana GN=PIRL9 PE=2 SV=1
trembl
ID B9RAU9
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1508820 PE=4 SV=1
Gene Ontology
ID GO:0004721
description plant intracellular ras-group-related lrr protein 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_230 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_004785_100 0.0431762993 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002078_110 0.0453647995 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
4 Hb_131646_010 0.0494585792 - - protein arginine n-methyltransferase, putative [Ricinus communis]
5 Hb_002686_250 0.0541143309 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
6 Hb_002823_030 0.0549354976 - - -
7 Hb_014361_070 0.0566170674 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
8 Hb_004209_020 0.0616078149 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
9 Hb_000975_040 0.0619821827 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
10 Hb_003680_150 0.0628517958 - - srpk, putative [Ricinus communis]
11 Hb_001104_160 0.0630871537 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
12 Hb_004195_200 0.0647893598 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
13 Hb_003018_130 0.0651733716 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
14 Hb_002375_010 0.0651961839 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
15 Hb_004055_150 0.0653556194 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000190_120 0.0663332002 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
17 Hb_000928_220 0.066996492 - - PREDICTED: protein SCAI [Jatropha curcas]
18 Hb_005588_090 0.0671309241 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
19 Hb_007576_110 0.0678340881 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
20 Hb_001347_040 0.0680514737 - - PREDICTED: uncharacterized protein LOC105633920 [Jatropha curcas]

Gene co-expression network

sample Hb_002835_230 Hb_002835_230 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_004785_100--Hb_131646_010 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_004785_100--Hb_002078_110 Hb_002078_110--Hb_002686_250 Hb_002078_110--Hb_131646_010 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080 Hb_131646_010--Hb_002686_250 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_002686_250--Hb_003029_030 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_014361_070--Hb_003371_110 Hb_007576_110 Hb_007576_110 Hb_014361_070--Hb_007576_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.49491 8.14181 6.51609 5.91455 11.2906 8.63333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46931 6.32118 5.24781 6.4295 5.05603

CAGE analysis