Hb_002835_280

Information

Type -
Description -
Location Contig2835: 251548-253527
Sequence    

Annotation

kegg
ID rcu:RCOM_1508870
description carbohydrate binding protein, putative (EC:2.7.11.30)
nr
ID XP_012079986.1
description PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
swissprot
ID Q9M9E0
description L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana GN=LECRKS1 PE=2 SV=1
trembl
ID A0A067KFJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11411 PE=3 SV=1
Gene Ontology
ID GO:0005773
description l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29649: 251376-253667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_280 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
2 Hb_005305_120 0.1143667347 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
3 Hb_001153_100 0.1171383024 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
4 Hb_001969_130 0.1294603382 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
5 Hb_000032_510 0.1324710279 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
6 Hb_000923_100 0.1335697653 - - chloride channel clc, putative [Ricinus communis]
7 Hb_001124_140 0.1341695991 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
8 Hb_005731_100 0.1360698299 - - monovalent cation:proton antiporter, putative [Ricinus communis]
9 Hb_005488_130 0.1371756331 - - transporter, putative [Ricinus communis]
10 Hb_009449_100 0.1414869387 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
11 Hb_004678_010 0.1461542332 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
12 Hb_009862_020 0.148520663 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
13 Hb_002026_030 0.1492199529 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_000800_010 0.1495747405 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
15 Hb_001250_080 0.1501554646 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
16 Hb_000334_050 0.1516023994 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
17 Hb_022425_050 0.1521291721 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
18 Hb_000665_200 0.1530725132 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_002391_320 0.1544829673 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
20 Hb_019837_010 0.1550743824 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002835_280 Hb_002835_280 Hb_005305_120 Hb_005305_120 Hb_002835_280--Hb_005305_120 Hb_001153_100 Hb_001153_100 Hb_002835_280--Hb_001153_100 Hb_001969_130 Hb_001969_130 Hb_002835_280--Hb_001969_130 Hb_000032_510 Hb_000032_510 Hb_002835_280--Hb_000032_510 Hb_000923_100 Hb_000923_100 Hb_002835_280--Hb_000923_100 Hb_001124_140 Hb_001124_140 Hb_002835_280--Hb_001124_140 Hb_000861_100 Hb_000861_100 Hb_005305_120--Hb_000861_100 Hb_005305_120--Hb_001124_140 Hb_002759_100 Hb_002759_100 Hb_005305_120--Hb_002759_100 Hb_009449_100 Hb_009449_100 Hb_005305_120--Hb_009449_100 Hb_005731_100 Hb_005731_100 Hb_005305_120--Hb_005731_100 Hb_001153_100--Hb_005731_100 Hb_000357_070 Hb_000357_070 Hb_001153_100--Hb_000357_070 Hb_001433_150 Hb_001433_150 Hb_001153_100--Hb_001433_150 Hb_022425_050 Hb_022425_050 Hb_001153_100--Hb_022425_050 Hb_034579_020 Hb_034579_020 Hb_001153_100--Hb_034579_020 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001969_130--Hb_001124_140 Hb_002026_030 Hb_002026_030 Hb_001969_130--Hb_002026_030 Hb_001969_130--Hb_022425_050 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300 Hb_000032_510--Hb_005731_100 Hb_000032_510--Hb_005305_120 Hb_000032_510--Hb_001124_140 Hb_000227_280 Hb_000227_280 Hb_000032_510--Hb_000227_280 Hb_000032_510--Hb_001433_150 Hb_009862_020 Hb_009862_020 Hb_000923_100--Hb_009862_020 Hb_000077_160 Hb_000077_160 Hb_000923_100--Hb_000077_160 Hb_000336_180 Hb_000336_180 Hb_000923_100--Hb_000336_180 Hb_000203_200 Hb_000203_200 Hb_000923_100--Hb_000203_200 Hb_121089_020 Hb_121089_020 Hb_000923_100--Hb_121089_020 Hb_001124_140--Hb_005731_100 Hb_001124_140--Hb_022425_050 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42989 24.0885 23.0091 24.0667 0.144932 0.770699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31327 5.42288 2.51911 7.43039 36.1923

CAGE analysis