Hb_002835_350

Information

Type -
Description -
Location Contig2835: 314207-315979
Sequence    

Annotation

kegg
ID rcu:RCOM_1509330
description hypothetical protein
nr
ID XP_012079992.1
description PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RAW0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1509330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29655: 302914-313340 , PASA_asmbl_29656: 302914-313340 , PASA_asmbl_29658: 314365-314870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_350 0.0 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
2 Hb_006141_030 0.1606369156 - - -
3 Hb_032631_050 0.1670429222 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
4 Hb_002539_010 0.1690728408 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
5 Hb_000116_590 0.1700208848 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
6 Hb_011200_020 0.1757245737 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_000098_310 0.1783336747 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_002025_350 0.1790122156 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
9 Hb_000421_270 0.1802389811 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
10 Hb_000753_250 0.1821407093 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
11 Hb_000005_230 0.1845067764 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
12 Hb_032225_040 0.1862027115 - - -
13 Hb_003972_060 0.1893141965 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
14 Hb_005181_180 0.1901200046 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003813_120 0.1906663296 - - zinc finger protein, putative [Ricinus communis]
16 Hb_012753_190 0.1928255121 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
17 Hb_011633_040 0.1934127437 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
18 Hb_001021_030 0.195063108 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
19 Hb_032225_030 0.196863852 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
20 Hb_001123_010 0.1969740511 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002835_350 Hb_002835_350 Hb_006141_030 Hb_006141_030 Hb_002835_350--Hb_006141_030 Hb_032631_050 Hb_032631_050 Hb_002835_350--Hb_032631_050 Hb_002539_010 Hb_002539_010 Hb_002835_350--Hb_002539_010 Hb_000116_590 Hb_000116_590 Hb_002835_350--Hb_000116_590 Hb_011200_020 Hb_011200_020 Hb_002835_350--Hb_011200_020 Hb_000098_310 Hb_000098_310 Hb_002835_350--Hb_000098_310 Hb_012753_190 Hb_012753_190 Hb_006141_030--Hb_012753_190 Hb_012545_090 Hb_012545_090 Hb_006141_030--Hb_012545_090 Hb_001123_010 Hb_001123_010 Hb_006141_030--Hb_001123_010 Hb_006141_030--Hb_002539_010 Hb_000116_120 Hb_000116_120 Hb_006141_030--Hb_000116_120 Hb_000421_270 Hb_000421_270 Hb_032631_050--Hb_000421_270 Hb_001348_210 Hb_001348_210 Hb_032631_050--Hb_001348_210 Hb_032631_050--Hb_011200_020 Hb_000963_200 Hb_000963_200 Hb_032631_050--Hb_000963_200 Hb_002025_350 Hb_002025_350 Hb_032631_050--Hb_002025_350 Hb_029584_090 Hb_029584_090 Hb_032631_050--Hb_029584_090 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_002539_020 Hb_002539_020 Hb_002539_010--Hb_002539_020 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_000625_030 Hb_000625_030 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_008226_070 Hb_008226_070 Hb_002539_010--Hb_008226_070 Hb_000116_590--Hb_000421_270 Hb_000116_590--Hb_002025_350 Hb_001405_150 Hb_001405_150 Hb_000116_590--Hb_001405_150 Hb_000116_590--Hb_032631_050 Hb_003592_030 Hb_003592_030 Hb_000116_590--Hb_003592_030 Hb_011200_020--Hb_000098_310 Hb_001504_220 Hb_001504_220 Hb_011200_020--Hb_001504_220 Hb_032225_040 Hb_032225_040 Hb_011200_020--Hb_032225_040 Hb_031042_030 Hb_031042_030 Hb_011200_020--Hb_031042_030 Hb_011200_020--Hb_000421_270 Hb_009823_010 Hb_009823_010 Hb_000098_310--Hb_009823_010 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000181_160 Hb_000181_160 Hb_000098_310--Hb_000181_160 Hb_001408_050 Hb_001408_050 Hb_000098_310--Hb_001408_050 Hb_000098_310--Hb_031042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0508796 0.578365 0.519191 1.34625 0.216254 0.0309652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206553 0.406285 0.153552 3.48762 0.427679

CAGE analysis