Hb_002835_370

Information

Type -
Description -
Location Contig2835: 337054-344113
Sequence    

Annotation

kegg
ID rcu:RCOM_1509350
description histone deacetylase 1, 2, 3, putative
nr
ID XP_002511337.1
description histone deacetylase 1, 2 ,3, putative [Ricinus communis]
swissprot
ID Q9FML2
description Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
trembl
ID B9RAW2
description Histone deacetylase OS=Ricinus communis GN=RCOM_1509350 PE=3 SV=1
Gene Ontology
ID GO:0032041
description histone deacetylase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29664: 336991-341581 , PASA_asmbl_29665: 343000-346682 , PASA_asmbl_29666: 344001-344413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_370 0.0 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
2 Hb_004221_020 0.0458677609 - - protein binding protein, putative [Ricinus communis]
3 Hb_002025_020 0.0529961528 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
4 Hb_000072_220 0.0554390818 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
5 Hb_001680_010 0.0598149879 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
6 Hb_009548_020 0.0605320547 - - structural constituent of cell wall, putative [Ricinus communis]
7 Hb_028089_010 0.0656245193 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
8 Hb_001409_020 0.0659868986 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
9 Hb_010139_040 0.0666520686 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001493_030 0.0676315249 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
11 Hb_000011_200 0.0684783161 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
12 Hb_000879_200 0.0689672286 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
13 Hb_010618_010 0.0702251566 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_003158_010 0.0704285036 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
15 Hb_004619_030 0.070773615 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
16 Hb_002131_020 0.0707969419 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
17 Hb_005993_050 0.0716333989 - - Protein AFR, putative [Ricinus communis]
18 Hb_003058_190 0.0719304129 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
19 Hb_123352_020 0.0725543474 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
20 Hb_001248_060 0.072711034 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002835_370 Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002835_370--Hb_004221_020 Hb_002025_020 Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_000072_220 Hb_000072_220 Hb_002835_370--Hb_000072_220 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_009548_020 Hb_009548_020 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_004221_020--Hb_000072_220 Hb_004221_020--Hb_002025_020 Hb_000347_070 Hb_000347_070 Hb_002025_020--Hb_000347_070 Hb_009545_100 Hb_009545_100 Hb_002025_020--Hb_009545_100 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_005993_020 Hb_005993_020 Hb_001680_010--Hb_005993_020 Hb_005532_050 Hb_005532_050 Hb_001680_010--Hb_005532_050 Hb_002131_020 Hb_002131_020 Hb_001680_010--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_001680_010--Hb_001301_200 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_028089_010--Hb_009548_020 Hb_001141_020 Hb_001141_020 Hb_028089_010--Hb_001141_020 Hb_004619_030 Hb_004619_030 Hb_028089_010--Hb_004619_030 Hb_000032_100 Hb_000032_100 Hb_028089_010--Hb_000032_100 Hb_028089_010--Hb_188063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.153 18.0802 14.4802 14.4097 26.3915 27.4622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9746 17.9504 30.1843 18.2757 16.0316

CAGE analysis