Hb_002836_100

Information

Type -
Description -
Location Contig2836: 128217-143056
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001658mg
description hypothetical protein
nr
ID XP_012067453.1
description PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q8L831
description Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1
trembl
ID A0A067LCV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26952 PE=4 SV=1
Gene Ontology
ID GO:0005773
description nudix hydrolase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29679: 139286-139595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002836_100 0.0 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
2 Hb_007426_140 0.0849490639 - - ornithine aminotransferase, putative [Ricinus communis]
3 Hb_083799_010 0.1023966856 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_001160_070 0.104560942 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
5 Hb_000395_220 0.1090327728 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_075315_010 0.1128398179 - - ornithine aminotransferase [Camellia sinensis]
7 Hb_033772_070 0.1134875019 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
8 Hb_005489_140 0.1164974638 - - PREDICTED: maspardin [Jatropha curcas]
9 Hb_005081_020 0.1193403616 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
10 Hb_006829_100 0.1198031069 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002272_170 0.1214268983 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
12 Hb_006502_030 0.1233273338 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
13 Hb_000692_160 0.1260896016 - - Transportin 1 isoform 1 [Theobroma cacao]
14 Hb_000243_300 0.1278457182 - - catalytic, putative [Ricinus communis]
15 Hb_000334_260 0.1293112206 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
16 Hb_002307_280 0.1302904142 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
17 Hb_122548_010 0.1317304215 - - acyl-CoA oxidase, putative [Ricinus communis]
18 Hb_000001_190 0.1324024404 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
19 Hb_002693_060 0.1329760656 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_002596_060 0.1346834825 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002836_100 Hb_002836_100 Hb_007426_140 Hb_007426_140 Hb_002836_100--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_002836_100--Hb_083799_010 Hb_001160_070 Hb_001160_070 Hb_002836_100--Hb_001160_070 Hb_000395_220 Hb_000395_220 Hb_002836_100--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_002836_100--Hb_075315_010 Hb_033772_070 Hb_033772_070 Hb_002836_100--Hb_033772_070 Hb_007426_140--Hb_000395_220 Hb_007426_140--Hb_083799_010 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_002272_170 Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_083799_010--Hb_000395_220 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_000334_260 Hb_000334_260 Hb_001160_070--Hb_000334_260 Hb_002995_040 Hb_002995_040 Hb_001160_070--Hb_002995_040 Hb_001497_060 Hb_001497_060 Hb_001160_070--Hb_001497_060 Hb_001160_070--Hb_083799_010 Hb_001307_240 Hb_001307_240 Hb_001160_070--Hb_001307_240 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_000395_220--Hb_002272_170 Hb_011287_010 Hb_011287_010 Hb_000395_220--Hb_011287_010 Hb_075315_010--Hb_005081_020 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160 Hb_005180_010 Hb_005180_010 Hb_033772_070--Hb_005180_010 Hb_033772_070--Hb_002272_170 Hb_033772_070--Hb_000395_220 Hb_000251_040 Hb_000251_040 Hb_033772_070--Hb_000251_040 Hb_033772_070--Hb_007426_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51645 2.04152 1.374 2.33737 1.07775 1.84085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.663637 0.835516 0.624871 3.91226 0.728309

CAGE analysis