Hb_002836_120

Information

Type transcription factor
Description TF Family: AP2
Location Contig2836: 153414-156415
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18350g
description hypothetical protein
nr
ID XP_011020562.1
description PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
swissprot
ID Q94AN4
description AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1
trembl
ID U5GNH0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s18350g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor at1g16060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29681: 153333-156371 , PASA_asmbl_29682: 153333-156398
cDNA
(Sanger)
(ID:Location)		 015_D20.ab1: 156097-156368

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002836_120 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
2 Hb_000005_180 0.0798530757 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001488_030 0.1397942201 - - biotin carboxyl carrier protein [Vernicia fordii]
4 Hb_000008_360 0.1415560992 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
5 Hb_000390_110 0.1454069122 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
6 Hb_001329_090 0.1709790228 - - conserved hypothetical protein [Ricinus communis]
7 Hb_169116_010 0.1748064104 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
8 Hb_140439_010 0.1768996653 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
9 Hb_014834_130 0.1815780073 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
10 Hb_009178_070 0.1837624712 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
11 Hb_000035_240 0.184524949 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010812_100 0.1895772323 - - phosphate transporter [Manihot esculenta]
13 Hb_019837_040 0.1958574294 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
14 Hb_004680_080 0.1979643384 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_000740_040 0.1983801934 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
16 Hb_003556_030 0.1988053724 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
17 Hb_011379_010 0.2023478493 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_003077_150 0.2024040972 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
19 Hb_001946_140 0.2028086811 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
20 Hb_001056_030 0.2067034203 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002836_120 Hb_002836_120 Hb_000005_180 Hb_000005_180 Hb_002836_120--Hb_000005_180 Hb_001488_030 Hb_001488_030 Hb_002836_120--Hb_001488_030 Hb_000008_360 Hb_000008_360 Hb_002836_120--Hb_000008_360 Hb_000390_110 Hb_000390_110 Hb_002836_120--Hb_000390_110 Hb_001329_090 Hb_001329_090 Hb_002836_120--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_002836_120--Hb_169116_010 Hb_000005_180--Hb_001488_030 Hb_000005_180--Hb_001329_090 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_000122_190 Hb_000122_190 Hb_001488_030--Hb_000122_190 Hb_000035_240 Hb_000035_240 Hb_001488_030--Hb_000035_240 Hb_001541_110 Hb_001541_110 Hb_001488_030--Hb_001541_110 Hb_000049_110 Hb_000049_110 Hb_001488_030--Hb_000049_110 Hb_001587_180 Hb_001587_180 Hb_001488_030--Hb_001587_180 Hb_000008_360--Hb_000390_110 Hb_001056_030 Hb_001056_030 Hb_000008_360--Hb_001056_030 Hb_140439_010 Hb_140439_010 Hb_000008_360--Hb_140439_010 Hb_000008_360--Hb_000005_180 Hb_010812_100 Hb_010812_100 Hb_000008_360--Hb_010812_100 Hb_000575_030 Hb_000575_030 Hb_000390_110--Hb_000575_030 Hb_000622_240 Hb_000622_240 Hb_000390_110--Hb_000622_240 Hb_001435_020 Hb_001435_020 Hb_000390_110--Hb_001435_020 Hb_014834_130 Hb_014834_130 Hb_000390_110--Hb_014834_130 Hb_003556_030 Hb_003556_030 Hb_001329_090--Hb_003556_030 Hb_001329_090--Hb_003077_150 Hb_001329_090--Hb_001541_110 Hb_001329_090--Hb_000035_240 Hb_000905_120 Hb_000905_120 Hb_001329_090--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_001329_090--Hb_000413_060 Hb_169116_010--Hb_001488_030 Hb_019837_040 Hb_019837_040 Hb_169116_010--Hb_019837_040 Hb_000105_100 Hb_000105_100 Hb_169116_010--Hb_000105_100 Hb_169116_010--Hb_000442_040 Hb_009851_010 Hb_009851_010 Hb_169116_010--Hb_009851_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3608 1.54167 39.4767 12.0798 4.40395 4.25306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1623 18.4807 10.3127 0.788787 24.994

CAGE analysis