Hb_002836_140

Information

Type -
Description -
Location Contig2836: 164415-171102
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18280g
description POPTRDRAFT_817587; hypothetical protein
nr
ID XP_012067468.1
description PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
swissprot
ID Q07326
description Phosphatidylinositol-glycan biosynthesis class F protein OS=Homo sapiens GN=PIGF PE=1 SV=1
trembl
ID A0A067L0I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26965 PE=4 SV=1
Gene Ontology
ID GO:0005789
description phosphatidylinositol-glycan biosynthesis class f protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29683: 164534-171055 , PASA_asmbl_29684: 165801-166291
cDNA
(Sanger)
(ID:Location)		 007_D23.ab1: 164534-170710

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002836_140 0.0 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
2 Hb_007951_040 0.0606432509 - - signal peptidase family protein [Populus trichocarpa]
3 Hb_000915_080 0.062836661 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
4 Hb_008556_030 0.0647056026 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
5 Hb_000414_050 0.0710364154 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
6 Hb_002783_170 0.0711152601 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
7 Hb_001486_170 0.0727420733 - - PREDICTED: syntaxin-132 [Jatropha curcas]
8 Hb_058999_030 0.0739081726 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
9 Hb_000101_380 0.0772669941 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
10 Hb_000776_100 0.07740454 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
11 Hb_001418_040 0.0786933799 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
12 Hb_000445_050 0.0802115067 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
13 Hb_002398_030 0.0827321553 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_000751_030 0.0836758858 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
15 Hb_001501_080 0.0844346675 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
16 Hb_001188_060 0.0860572953 - - -
17 Hb_003549_090 0.0887914646 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
18 Hb_001269_230 0.0888303853 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
19 Hb_004007_220 0.089433595 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
20 Hb_000007_280 0.0896770085 - - hypothetical protein VITISV_000066 [Vitis vinifera]

Gene co-expression network

sample Hb_002836_140 Hb_002836_140 Hb_007951_040 Hb_007951_040 Hb_002836_140--Hb_007951_040 Hb_000915_080 Hb_000915_080 Hb_002836_140--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_002836_140--Hb_008556_030 Hb_000414_050 Hb_000414_050 Hb_002836_140--Hb_000414_050 Hb_002783_170 Hb_002783_170 Hb_002836_140--Hb_002783_170 Hb_001486_170 Hb_001486_170 Hb_002836_140--Hb_001486_170 Hb_007951_040--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_007951_040--Hb_000776_100 Hb_003688_090 Hb_003688_090 Hb_007951_040--Hb_003688_090 Hb_003038_120 Hb_003038_120 Hb_007951_040--Hb_003038_120 Hb_007951_040--Hb_000915_080 Hb_000007_280 Hb_000007_280 Hb_000915_080--Hb_000007_280 Hb_000101_380 Hb_000101_380 Hb_000915_080--Hb_000101_380 Hb_002042_030 Hb_002042_030 Hb_000915_080--Hb_002042_030 Hb_000915_080--Hb_002783_170 Hb_000915_080--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_008556_030--Hb_001418_040 Hb_000797_050 Hb_000797_050 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_000031_280 Hb_000031_280 Hb_008556_030--Hb_000031_280 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_000414_050--Hb_002783_170 Hb_000414_050--Hb_000776_100 Hb_000414_050--Hb_002042_030 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130 Hb_002783_170--Hb_000776_100 Hb_002783_170--Hb_000101_380 Hb_005463_130 Hb_005463_130 Hb_001486_170--Hb_005463_130 Hb_013726_080 Hb_013726_080 Hb_001486_170--Hb_013726_080 Hb_002054_050 Hb_002054_050 Hb_001486_170--Hb_002054_050 Hb_001486_170--Hb_000915_080 Hb_001486_170--Hb_008556_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.91534 3.17594 9.33236 7.57883 9.12633 9.55815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18767 4.32546 3.83058 4.3347 4.1921

CAGE analysis