Hb_002837_030

Information

Type -
Description -
Location Contig2837: 46642-50894
Sequence    

Annotation

kegg
ID rcu:RCOM_0066480
description hypothetical protein
nr
ID XP_002531427.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SAC4
description F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1
trembl
ID B9SZK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0066480 PE=4 SV=1
Gene Ontology
ID GO:0009506
description f-box protein at1g10780

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29687: 48984-49103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004963_020 0.0758563692 - - PREDICTED: patellin-4 [Populus euphratica]
3 Hb_002473_030 0.0810769626 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
4 Hb_005649_050 0.0872191145 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004032_390 0.0988655904 - - CDK, putative [Ricinus communis]
6 Hb_001564_100 0.1007882521 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
7 Hb_162378_020 0.1021049148 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
8 Hb_006788_130 0.1048853769 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
9 Hb_001235_040 0.1049278963 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
10 Hb_010021_060 0.1054961707 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
11 Hb_011063_030 0.1057905511 - - protein with unknown function [Ricinus communis]
12 Hb_001220_020 0.108335922 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
13 Hb_001454_180 0.1086040824 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
14 Hb_000316_070 0.1107485014 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
15 Hb_004102_090 0.111023628 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
16 Hb_000084_230 0.1119629852 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
17 Hb_003398_050 0.112210606 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
18 Hb_001168_030 0.1135158889 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
19 Hb_001699_090 0.1147641223 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008406_150 0.1174411164 - - PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002837_030 Hb_002837_030 Hb_004963_020 Hb_004963_020 Hb_002837_030--Hb_004963_020 Hb_002473_030 Hb_002473_030 Hb_002837_030--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_002837_030--Hb_005649_050 Hb_004032_390 Hb_004032_390 Hb_002837_030--Hb_004032_390 Hb_001564_100 Hb_001564_100 Hb_002837_030--Hb_001564_100 Hb_162378_020 Hb_162378_020 Hb_002837_030--Hb_162378_020 Hb_004963_020--Hb_002473_030 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_004963_020--Hb_005649_050 Hb_002473_030--Hb_005649_050 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_005649_050--Hb_162378_020 Hb_004032_390--Hb_001220_020 Hb_004032_390--Hb_003398_050 Hb_004032_390--Hb_162378_020 Hb_003776_050 Hb_003776_050 Hb_004032_390--Hb_003776_050 Hb_002928_150 Hb_002928_150 Hb_004032_390--Hb_002928_150 Hb_004174_030 Hb_004174_030 Hb_004032_390--Hb_004174_030 Hb_006788_130 Hb_006788_130 Hb_001564_100--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001564_100--Hb_000084_230 Hb_001235_040 Hb_001235_040 Hb_001564_100--Hb_001235_040 Hb_001564_100--Hb_001220_020 Hb_011859_010 Hb_011859_010 Hb_001564_100--Hb_011859_010 Hb_006332_030 Hb_006332_030 Hb_001564_100--Hb_006332_030 Hb_162378_020--Hb_001220_020 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222024 0.0635709 4.85011 1.12246 0.0610304 0.0235052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0320176 0 0.178181 0.135684

CAGE analysis