Hb_002837_040

Information

Type -
Description -
Location Contig2837: 51847-54858
Sequence    

Annotation

kegg
ID rcu:RCOM_0066490
description Transmembrane emp24 domain-containing protein 10 precursor, putative
nr
ID XP_002531428.1
description Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
swissprot
ID Q6IDL4
description Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1
trembl
ID B9SZK9
description Transmembrane emp24 domain-containing protein 10, putative OS=Ricinus communis GN=RCOM_0066490 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transmembrane emp24 domain-containing protein p24delta3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29689: 51827-54816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_040 0.0 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
2 Hb_000645_070 0.0480476215 - - aldehyde dehydrogenase, putative [Ricinus communis]
3 Hb_000903_010 0.0767793366 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
4 Hb_000154_050 0.0768489688 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_002749_080 0.081639155 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003058_100 0.0829163096 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
7 Hb_006588_160 0.0846131421 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_002871_140 0.0883382717 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
9 Hb_010172_010 0.0884543544 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
10 Hb_000634_020 0.0930422834 - - hypothetical protein JCGZ_11888 [Jatropha curcas]
11 Hb_000261_210 0.0935390996 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_022693_130 0.0976788605 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_001053_080 0.1018167173 - - OsCesA3 protein [Morus notabilis]
14 Hb_004013_030 0.1033617835 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
15 Hb_014361_060 0.105188621 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
16 Hb_000358_210 0.1071939775 - - oligosaccharyl transferase, putative [Ricinus communis]
17 Hb_005064_010 0.1110956241 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
18 Hb_000054_040 0.1115400435 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
19 Hb_001279_090 0.1120676829 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
20 Hb_001450_020 0.1122265203 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_002837_040 Hb_002837_040 Hb_000645_070 Hb_000645_070 Hb_002837_040--Hb_000645_070 Hb_000903_010 Hb_000903_010 Hb_002837_040--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002837_040--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002837_040--Hb_002749_080 Hb_003058_100 Hb_003058_100 Hb_002837_040--Hb_003058_100 Hb_006588_160 Hb_006588_160 Hb_002837_040--Hb_006588_160 Hb_000645_070--Hb_003058_100 Hb_000645_070--Hb_000154_050 Hb_000645_070--Hb_002749_080 Hb_000645_070--Hb_000903_010 Hb_002871_140 Hb_002871_140 Hb_000645_070--Hb_002871_140 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_000903_010--Hb_002871_140 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_000903_010--Hb_002749_080 Hb_001002_060 Hb_001002_060 Hb_000903_010--Hb_001002_060 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_002749_080--Hb_000787_060 Hb_002749_080--Hb_002871_140 Hb_000579_070 Hb_000579_070 Hb_002749_080--Hb_000579_070 Hb_000056_160 Hb_000056_160 Hb_002749_080--Hb_000056_160 Hb_019654_020 Hb_019654_020 Hb_003058_100--Hb_019654_020 Hb_022693_130 Hb_022693_130 Hb_003058_100--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_003058_100--Hb_000645_180 Hb_010172_010 Hb_010172_010 Hb_003058_100--Hb_010172_010 Hb_006588_160--Hb_004013_030 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6377 10.3193 43.6472 45.4354 24.7371 19.1576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.58564 9.11024 11.2257 20.3718 37.5893

CAGE analysis