Hb_002837_060

Information

Type -
Description -
Location Contig2837: 70576-76496
Sequence    

Annotation

kegg
ID mus:103968691
description uncharacterized protein At1g10890-like
nr
ID XP_010274311.1
description PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
swissprot
ID P0CB26
description Uncharacterized protein At1g10890 OS=Arabidopsis thaliana GN=At1g10890 PE=4 SV=1
trembl
ID M0RJM7
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29691: 73069-76558 , PASA_asmbl_29693: 70919-72001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_060 0.0 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
2 Hb_032990_010 0.087425672 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
3 Hb_000101_380 0.087566026 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
4 Hb_000983_170 0.0980513963 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
5 Hb_005503_040 0.0995676847 - - PREDICTED: AMP deaminase [Jatropha curcas]
6 Hb_001396_280 0.1000507057 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
7 Hb_000879_160 0.1009337983 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
8 Hb_003038_120 0.1017535262 - - rer1 protein, putative [Ricinus communis]
9 Hb_003897_040 0.1022435049 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
10 Hb_000933_010 0.1022744612 - - -
11 Hb_143629_150 0.1029773258 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
12 Hb_005460_050 0.104086968 - - COR413-PM2, putative [Ricinus communis]
13 Hb_000261_230 0.10515995 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
14 Hb_011609_140 0.1054147821 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
15 Hb_002791_030 0.1061306933 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_029866_100 0.1065532717 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
17 Hb_000120_430 0.1065547181 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
18 Hb_000527_010 0.1067571117 - - katanin P80 subunit, putative [Ricinus communis]
19 Hb_005588_090 0.1082950953 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
20 Hb_000120_550 0.1103487424 - - hypothetical protein JCGZ_22416 [Jatropha curcas]

Gene co-expression network

sample Hb_002837_060 Hb_002837_060 Hb_032990_010 Hb_032990_010 Hb_002837_060--Hb_032990_010 Hb_000101_380 Hb_000101_380 Hb_002837_060--Hb_000101_380 Hb_000983_170 Hb_000983_170 Hb_002837_060--Hb_000983_170 Hb_005503_040 Hb_005503_040 Hb_002837_060--Hb_005503_040 Hb_001396_280 Hb_001396_280 Hb_002837_060--Hb_001396_280 Hb_000879_160 Hb_000879_160 Hb_002837_060--Hb_000879_160 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_005460_050 Hb_005460_050 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_000007_280 Hb_000007_280 Hb_000101_380--Hb_000007_280 Hb_000776_100 Hb_000776_100 Hb_000101_380--Hb_000776_100 Hb_000915_080 Hb_000915_080 Hb_000101_380--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000101_380--Hb_001005_030 Hb_017700_010 Hb_017700_010 Hb_000101_380--Hb_017700_010 Hb_000101_380--Hb_000737_030 Hb_000243_160 Hb_000243_160 Hb_000983_170--Hb_000243_160 Hb_000983_170--Hb_003038_120 Hb_000983_170--Hb_001396_280 Hb_000034_080 Hb_000034_080 Hb_000983_170--Hb_000034_080 Hb_001077_030 Hb_001077_030 Hb_000983_170--Hb_001077_030 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_004668_060 Hb_004668_060 Hb_005503_040--Hb_004668_060 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_007508_080 Hb_007508_080 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_029866_100 Hb_029866_100 Hb_001396_280--Hb_029866_100 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_000392_370 Hb_000392_370 Hb_001396_280--Hb_000392_370 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020 Hb_000935_090 Hb_000935_090 Hb_000879_160--Hb_000935_090 Hb_000046_070 Hb_000046_070 Hb_000879_160--Hb_000046_070 Hb_000796_190 Hb_000796_190 Hb_000879_160--Hb_000796_190 Hb_004429_160 Hb_004429_160 Hb_000879_160--Hb_004429_160 Hb_000025_650 Hb_000025_650 Hb_000879_160--Hb_000025_650 Hb_007558_120 Hb_007558_120 Hb_000879_160--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0214 18.5313 17.4141 27.7776 26.3708 27.1461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7419 14.0364 4.59633 20.6545 15.2814

CAGE analysis