Hb_002838_010

Information

Type -
Description -
Location Contig2838: 5548-10859
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12140g
description POPTRDRAFT_721986; ADP-glucose pyrophosphorylase large subunit family protein
nr
ID AHM92232.1
description AGPase large subunit protein [Hevea brasiliensis]
swissprot
ID P55231
description Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2
trembl
ID X2F9N2
description Glucose-1-phosphate adenylyltransferase OS=Hevea brasiliensis GN=LSUI PE=2 SV=1
Gene Ontology
ID GO:0009507
description glucose-1-phosphate adenylyltransferase large subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29705: 5586-11033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002838_010 0.0 - - AGPase large subunit protein [Hevea brasiliensis]
2 Hb_000941_090 0.0871834353 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
3 Hb_000272_030 0.0964386772 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
4 Hb_001143_120 0.1084325575 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
5 Hb_001486_100 0.1089101807 - - tubulin alpha chain, putative [Ricinus communis]
6 Hb_000260_410 0.1103583399 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
7 Hb_000659_040 0.1120549625 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_000096_110 0.1139659656 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
9 Hb_006970_170 0.1168428056 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_000320_450 0.1187425665 - - secretory peroxidase [Hevea brasiliensis]
11 Hb_002311_280 0.1214457208 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_006570_060 0.1233748177 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
13 Hb_017491_010 0.1236390173 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
14 Hb_031862_120 0.1240108305 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
15 Hb_106089_010 0.1244282883 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_002871_110 0.126767397 transcription factor TF Family: ARF hypothetical protein POPTR_0014s12980g [Populus trichocarpa]
17 Hb_000173_270 0.1273883564 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
18 Hb_000326_080 0.1274692926 - - lrr receptor protein kinase, putative [Ricinus communis]
19 Hb_001318_100 0.1276805382 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_000215_290 0.128142411 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002838_010 Hb_002838_010 Hb_000941_090 Hb_000941_090 Hb_002838_010--Hb_000941_090 Hb_000272_030 Hb_000272_030 Hb_002838_010--Hb_000272_030 Hb_001143_120 Hb_001143_120 Hb_002838_010--Hb_001143_120 Hb_001486_100 Hb_001486_100 Hb_002838_010--Hb_001486_100 Hb_000260_410 Hb_000260_410 Hb_002838_010--Hb_000260_410 Hb_000659_040 Hb_000659_040 Hb_002838_010--Hb_000659_040 Hb_001417_060 Hb_001417_060 Hb_000941_090--Hb_001417_060 Hb_031862_120 Hb_031862_120 Hb_000941_090--Hb_031862_120 Hb_001789_120 Hb_001789_120 Hb_000941_090--Hb_001789_120 Hb_000941_090--Hb_000272_030 Hb_000941_090--Hb_000260_410 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000260_410 Hb_000173_270 Hb_000173_270 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_001143_120--Hb_000173_270 Hb_001301_260 Hb_001301_260 Hb_001143_120--Hb_001301_260 Hb_005365_010 Hb_005365_010 Hb_001143_120--Hb_005365_010 Hb_044653_050 Hb_044653_050 Hb_001143_120--Hb_044653_050 Hb_001143_120--Hb_000260_410 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_002740_100 Hb_002740_100 Hb_001486_100--Hb_002740_100 Hb_000326_080 Hb_000326_080 Hb_001486_100--Hb_000326_080 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_000260_410--Hb_000173_270 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_001629_120 Hb_001629_120 Hb_000260_410--Hb_001629_120 Hb_000818_090 Hb_000818_090 Hb_000260_410--Hb_000818_090 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000659_040--Hb_000272_030 Hb_001318_100 Hb_001318_100 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219247 4.63623 5.41121 5.91829 0.157815 0.0474645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201995 0.035319 0.234448 1.80553 6.4948

CAGE analysis