Hb_002838_030

Information

Type -
Description -
Location Contig2838: 28011-29821
Sequence    

Annotation

kegg
ID rcu:RCOM_1447530
description 40S ribosomal protein S25-1, putative
nr
ID ADR71264.1
description 40S ribosomal protein S25A [Hevea brasiliensis]
swissprot
ID Q9SIK2
description 40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1
trembl
ID I3NMM7
description 40S ribosomal protein S25A OS=Hevea brasiliensis GN=RPS25A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s25-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29706: 27846-29823 , PASA_asmbl_29707: 29223-29398
cDNA
(Sanger)
(ID:Location)		 003_E10.ab1: 27993-29823 , 010_J17.ab1: 27921-29823 , 017_M17.ab1: 27991-29823 , 018_L22.ab1: 27991-29823 , 019_O05.ab1: 27989-29823 , 023_F21.ab1: 27950-29823 , 029_A24.ab1: 28171-29773 , 031_E07.ab1: 27991-29828 , 035_N15.ab1: 27920-29823 , 048_L04.ab1: 27961-29823

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002838_030 0.0 - - 40S ribosomal protein S25A [Hevea brasiliensis]
2 Hb_000997_120 0.0633834926 - - 40S ribosomal protein S15E [Hevea brasiliensis]
3 Hb_007120_090 0.0704418714 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
4 Hb_000915_120 0.0728666599 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
5 Hb_000948_220 0.0789038842 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
6 Hb_003020_330 0.080983281 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
7 Hb_000087_130 0.090742092 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
8 Hb_004125_110 0.0944317704 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
9 Hb_001269_490 0.0949390257 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027684_020 0.0975219507 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
11 Hb_006915_040 0.0980714728 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
12 Hb_003376_190 0.0988315166 - - syntaxin, putative [Ricinus communis]
13 Hb_012395_130 0.1005417343 - - Os02g0814700 [Oryza sativa Japonica Group]
14 Hb_001155_040 0.1016033106 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
15 Hb_000203_020 0.1025822496 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
16 Hb_000768_130 0.102872138 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
17 Hb_006588_080 0.1039738538 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
18 Hb_006452_040 0.1052578009 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
19 Hb_000576_060 0.1069619426 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
20 Hb_002324_010 0.1072358217 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]

Gene co-expression network

sample Hb_002838_030 Hb_002838_030 Hb_000997_120 Hb_000997_120 Hb_002838_030--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_002838_030--Hb_007120_090 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_000997_120--Hb_007120_090 Hb_012395_130 Hb_012395_130 Hb_000997_120--Hb_012395_130 Hb_004543_040 Hb_004543_040 Hb_000997_120--Hb_004543_040 Hb_004125_110 Hb_004125_110 Hb_000997_120--Hb_004125_110 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_007120_090--Hb_012395_130 Hb_000203_020 Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_002006_130 Hb_002006_130 Hb_000915_120--Hb_002006_130 Hb_002588_010 Hb_002588_010 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390 Hb_000948_220--Hb_000087_130 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
317.453 175.285 416.353 966.685 258.99 440.844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1220.91 2814.09 834.896 592.545 200.008

CAGE analysis