Hb_002843_140

Information

Type -
Description -
Location Contig2843: 95796-98460
Sequence    

Annotation

kegg
ID rcu:RCOM_0950610
description hypothetical protein
nr
ID KDP27402.1
description hypothetical protein JCGZ_20933 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JU35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20933 PE=4 SV=1
Gene Ontology
ID GO:0005622
description hypothetical protein JCGZ_20933

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29758: 95860-98459
cDNA
(Sanger)
(ID:Location)		 005_F24.ab1: 95855-98459 , 007_P19.ab1: 95860-98216 , 009_O05.ab1: 95882-98456 , 019_F11.ab1: 95860-98216 , 019_P14.ab1: 95855-98459 , 020_N17.ab1: 95860-98216 , 052_F11.ab1: 95860-98216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_140 0.0 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
2 Hb_007441_330 0.0783284217 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
3 Hb_004459_040 0.0786326092 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
4 Hb_000840_180 0.0799161449 - - protein BOLA2 [Jatropha curcas]
5 Hb_000789_230 0.0825049916 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
6 Hb_000996_140 0.0884588374 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
7 Hb_143496_010 0.0909220633 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
8 Hb_005181_030 0.092977975 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
9 Hb_026053_020 0.0933978147 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
10 Hb_004846_090 0.0935485405 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
11 Hb_000453_090 0.0946421397 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
12 Hb_007576_170 0.0949532843 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000169_040 0.0973279934 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
14 Hb_010175_040 0.0976180203 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
15 Hb_000224_140 0.0984006694 - - ribonuclease z, chloroplast, putative [Ricinus communis]
16 Hb_002798_020 0.0987238771 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
17 Hb_001512_080 0.0992851908 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
18 Hb_002110_200 0.0995248098 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_004102_070 0.0997732791 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
20 Hb_005063_050 0.100126491 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002843_140 Hb_002843_140 Hb_007441_330 Hb_007441_330 Hb_002843_140--Hb_007441_330 Hb_004459_040 Hb_004459_040 Hb_002843_140--Hb_004459_040 Hb_000840_180 Hb_000840_180 Hb_002843_140--Hb_000840_180 Hb_000789_230 Hb_000789_230 Hb_002843_140--Hb_000789_230 Hb_000996_140 Hb_000996_140 Hb_002843_140--Hb_000996_140 Hb_143496_010 Hb_143496_010 Hb_002843_140--Hb_143496_010 Hb_007441_330--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_007441_330--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_007441_330--Hb_010175_040 Hb_000826_100 Hb_000826_100 Hb_007441_330--Hb_000826_100 Hb_000103_320 Hb_000103_320 Hb_007441_330--Hb_000103_320 Hb_008071_020 Hb_008071_020 Hb_007441_330--Hb_008071_020 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_004127_020 Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_002798_020 Hb_002798_020 Hb_000840_180--Hb_002798_020 Hb_000840_180--Hb_004459_040 Hb_000840_180--Hb_026053_020 Hb_000840_180--Hb_000996_140 Hb_000016_080 Hb_000016_080 Hb_000789_230--Hb_000016_080 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_007065_010 Hb_007065_010 Hb_000789_230--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_000789_230--Hb_000254_050 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_000996_140--Hb_026053_020 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_143496_010--Hb_010175_040 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_001141_140 Hb_001141_140 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1735 5.25605 26.5218 30.8888 25.2008 17.9522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.1756 89.9713 44.156 18.7657 27.9172

CAGE analysis