Hb_002843_160

Information

Type -
Description -
Location Contig2843: 125637-129646
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02990g
description POPTRDRAFT_569626; hypothetical protein
nr
ID XP_012086888.1
description PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
swissprot
ID Q9SSL9
description Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1
trembl
ID B9I228
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02990g PE=4 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_160 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
2 Hb_002989_080 0.0810046304 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
3 Hb_000249_110 0.0833337957 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
4 Hb_000789_190 0.089998085 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
5 Hb_014067_010 0.0987684558 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
6 Hb_004884_060 0.1041588027 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
7 Hb_003906_110 0.1118591909 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
8 Hb_007178_010 0.1230993012 - - pseudo-hevein [Hevea brasiliensis]
9 Hb_002232_180 0.1255025251 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
10 Hb_000571_070 0.1282166431 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
11 Hb_027751_020 0.1286851956 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
12 Hb_002609_260 0.1324733998 - - CCCH-type zinc finger protein [Hevea brasiliensis]
13 Hb_005730_020 0.1363175726 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
14 Hb_004126_010 0.1364144367 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_000907_100 0.1398793782 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
16 Hb_004032_080 0.1417436441 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
17 Hb_000270_420 0.1419827933 - - actin binding protein, putative [Ricinus communis]
18 Hb_003906_120 0.1427140029 - - -
19 Hb_002301_320 0.1435811411 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
20 Hb_000853_370 0.144801636 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]

Gene co-expression network

sample Hb_002843_160 Hb_002843_160 Hb_002989_080 Hb_002989_080 Hb_002843_160--Hb_002989_080 Hb_000249_110 Hb_000249_110 Hb_002843_160--Hb_000249_110 Hb_000789_190 Hb_000789_190 Hb_002843_160--Hb_000789_190 Hb_014067_010 Hb_014067_010 Hb_002843_160--Hb_014067_010 Hb_004884_060 Hb_004884_060 Hb_002843_160--Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_002843_160--Hb_003906_110 Hb_002989_080--Hb_003906_110 Hb_000603_200 Hb_000603_200 Hb_002989_080--Hb_000603_200 Hb_007178_010 Hb_007178_010 Hb_002989_080--Hb_007178_010 Hb_004545_150 Hb_004545_150 Hb_002989_080--Hb_004545_150 Hb_002232_180 Hb_002232_180 Hb_002989_080--Hb_002232_180 Hb_027751_020 Hb_027751_020 Hb_000249_110--Hb_027751_020 Hb_002609_260 Hb_002609_260 Hb_000249_110--Hb_002609_260 Hb_000249_110--Hb_004884_060 Hb_003001_030 Hb_003001_030 Hb_000249_110--Hb_003001_030 Hb_000249_110--Hb_003906_110 Hb_000789_190--Hb_000249_110 Hb_000789_190--Hb_014067_010 Hb_000789_190--Hb_002609_260 Hb_000571_070 Hb_000571_070 Hb_000789_190--Hb_000571_070 Hb_002835_170 Hb_002835_170 Hb_000789_190--Hb_002835_170 Hb_004126_010 Hb_004126_010 Hb_014067_010--Hb_004126_010 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_005730_020 Hb_005730_020 Hb_014067_010--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_014067_010--Hb_009510_030 Hb_004884_060--Hb_003906_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_004884_060--Hb_002989_080 Hb_004884_060--Hb_007178_010 Hb_003906_120 Hb_003906_120 Hb_003906_110--Hb_003906_120 Hb_010931_100 Hb_010931_100 Hb_003906_110--Hb_010931_100 Hb_003906_110--Hb_007178_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2094 1.7412 0.311985 0.975808 30.4265 38.6919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5191 17.3792 33.8374 2.53056 0.147984

CAGE analysis