Hb_002843_210

Information

Type -
Description -
Location Contig2843: 202614-206581
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16060g
description hypothetical protein
nr
ID XP_012088568.1
description PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JWH7
description Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Jatropha curcas GN=JCGZ_27104 PE=3 SV=1
Gene Ontology
ID GO:0070072
description vacuolar atpase assembly integral membrane protein vma21-like domain isoform 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29769: 202455-206613 , PASA_asmbl_29771: 205085-206359
cDNA
(Sanger)
(ID:Location)		 006_H19.ab1: 202511-206613 , 011_D18.ab1: 202495-206574 , 020_F01.ab1: 202563-206584 , 024_B23.ab1: 202514-206563 , 038_O19.ab1: 202510-206613

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_210 0.0 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
2 Hb_003561_030 0.0912067933 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
3 Hb_000367_210 0.095277875 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
4 Hb_187083_010 0.0964518738 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
5 Hb_014834_030 0.096642764 - - -
6 Hb_002025_300 0.1055341675 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
7 Hb_075359_010 0.1060159709 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_007520_060 0.121402598 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_000025_240 0.121533671 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
10 Hb_000367_030 0.1236268307 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
11 Hb_005914_200 0.1242877039 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
12 Hb_001638_240 0.1249017274 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
13 Hb_004333_030 0.1258629925 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
14 Hb_001935_150 0.1262717582 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
15 Hb_000722_040 0.1267081322 - - -
16 Hb_004041_040 0.1299859443 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
17 Hb_000300_390 0.1306924649 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
18 Hb_003663_070 0.1330952516 - - -
19 Hb_000896_120 0.1345006547 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
20 Hb_005663_120 0.1346134766 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]

Gene co-expression network

sample Hb_002843_210 Hb_002843_210 Hb_003561_030 Hb_003561_030 Hb_002843_210--Hb_003561_030 Hb_000367_210 Hb_000367_210 Hb_002843_210--Hb_000367_210 Hb_187083_010 Hb_187083_010 Hb_002843_210--Hb_187083_010 Hb_014834_030 Hb_014834_030 Hb_002843_210--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_002843_210--Hb_002025_300 Hb_075359_010 Hb_075359_010 Hb_002843_210--Hb_075359_010 Hb_000722_040 Hb_000722_040 Hb_003561_030--Hb_000722_040 Hb_011161_050 Hb_011161_050 Hb_003561_030--Hb_011161_050 Hb_003561_030--Hb_187083_010 Hb_000975_110 Hb_000975_110 Hb_003561_030--Hb_000975_110 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_000367_210--Hb_187083_010 Hb_000163_130 Hb_000163_130 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_000820_130 Hb_000820_130 Hb_000367_210--Hb_000820_130 Hb_005914_200 Hb_005914_200 Hb_000367_210--Hb_005914_200 Hb_000236_460 Hb_000236_460 Hb_187083_010--Hb_000236_460 Hb_187083_010--Hb_000163_130 Hb_021409_090 Hb_021409_090 Hb_187083_010--Hb_021409_090 Hb_187083_010--Hb_011161_050 Hb_001935_150 Hb_001935_150 Hb_014834_030--Hb_001935_150 Hb_014834_030--Hb_000367_210 Hb_014834_030--Hb_187083_010 Hb_014834_030--Hb_003561_030 Hb_001158_150 Hb_001158_150 Hb_014834_030--Hb_001158_150 Hb_000648_020 Hb_000648_020 Hb_002025_300--Hb_000648_020 Hb_006718_010 Hb_006718_010 Hb_002025_300--Hb_006718_010 Hb_002025_300--Hb_005914_200 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_000025_240 Hb_000025_240 Hb_002025_300--Hb_000025_240 Hb_075359_010--Hb_001935_150 Hb_042710_010 Hb_042710_010 Hb_075359_010--Hb_042710_010 Hb_075359_010--Hb_000025_240 Hb_004333_030 Hb_004333_030 Hb_075359_010--Hb_004333_030 Hb_075359_010--Hb_187083_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8245 6.21674 3.64687 59.0334 11.3067 54.5421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.95 151.066 87.4244 25.045 7.74039

CAGE analysis