Hb_002849_070

Information

Type -
Description -
Location Contig2849: 55169-56224
Sequence    

Annotation

kegg
ID rcu:RCOM_1616310
description hypothetical protein
nr
ID XP_012083325.1
description PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LMM6
description Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1
trembl
ID B9RDW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1616310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29822: 54251-56508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_070 0.0 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
2 Hb_000200_170 0.0444004805 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
3 Hb_000056_080 0.0759583881 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
4 Hb_000203_270 0.0899025218 - - alpha-xylosidase, putative [Ricinus communis]
5 Hb_000735_140 0.0992615432 - - 3-glucanase family protein [Populus trichocarpa]
6 Hb_033363_010 0.106439184 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
7 Hb_001818_060 0.1099257631 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
8 Hb_004724_330 0.113025912 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
9 Hb_006949_060 0.1165931708 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
10 Hb_000950_040 0.1177839467 - - cation-transporting atpase plant, putative [Ricinus communis]
11 Hb_143766_030 0.118143555 - - protein with unknown function [Ricinus communis]
12 Hb_000069_780 0.119665551 - - atpob1, putative [Ricinus communis]
13 Hb_002349_030 0.1204305972 - - conserved hypothetical protein [Ricinus communis]
14 Hb_132840_030 0.1218369636 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
15 Hb_056196_060 0.1242244521 - - hexokinase [Manihot esculenta]
16 Hb_004218_120 0.1248959854 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
17 Hb_005714_100 0.1280250107 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
18 Hb_000465_260 0.1284922949 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
19 Hb_000836_600 0.128845491 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
20 Hb_001675_320 0.1291777724 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_070 Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_002849_070--Hb_000200_170 Hb_000056_080 Hb_000056_080 Hb_002849_070--Hb_000056_080 Hb_000203_270 Hb_000203_270 Hb_002849_070--Hb_000203_270 Hb_000735_140 Hb_000735_140 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000200_170--Hb_000203_270 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_000200_170--Hb_001818_060 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_000735_140--Hb_003849_190 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000072_020 Hb_000072_020 Hb_033363_010--Hb_000072_020 Hb_000227_320 Hb_000227_320 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_000465_260 Hb_000465_260 Hb_001818_060--Hb_000465_260 Hb_004631_110 Hb_004631_110 Hb_001818_060--Hb_004631_110 Hb_001195_350 Hb_001195_350 Hb_001818_060--Hb_001195_350 Hb_000676_040 Hb_000676_040 Hb_001818_060--Hb_000676_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0779 225.345 123.352 225.72 29.5485 30.5062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2553 30.6276 22.848 85.5244 86.3058

CAGE analysis