Hb_002849_080

Information

Type -
Description -
Location Contig2849: 57187-63554
Sequence    

Annotation

kegg
ID vvi:100852927
description mitogen-activated protein kinase homolog MMK2
nr
ID XP_012083328.1
description PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
swissprot
ID Q40353
description Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1
trembl
ID A0A067JX92
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_14357 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase homolog mmk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29822: 54251-56508 , PASA_asmbl_29824: 62404-62799 , PASA_asmbl_29825: 57228-63510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_080 0.0 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
2 Hb_148209_020 0.0670609217 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
3 Hb_006316_070 0.0708695305 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_002977_010 0.0803913148 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
5 Hb_002609_010 0.0854932519 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
6 Hb_011465_030 0.0889147897 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_005038_020 0.0899203571 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_003106_150 0.0958871846 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
9 Hb_012395_160 0.0964447885 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
10 Hb_001946_300 0.0975087572 - - PREDICTED: F-box protein At-B [Jatropha curcas]
11 Hb_001247_230 0.0975977256 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_002477_150 0.0988253996 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
13 Hb_003349_010 0.0992387689 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
14 Hb_009028_030 0.1007818336 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
15 Hb_000685_080 0.1008407159 - - protein binding protein, putative [Ricinus communis]
16 Hb_032202_240 0.1021753128 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
17 Hb_005399_020 0.1024119957 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
18 Hb_000363_130 0.1032037474 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
19 Hb_000265_250 0.1037203116 - - auxilin, putative [Ricinus communis]
20 Hb_004017_040 0.1111587368 - - kinetochore protein nuf2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002849_080 Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_006316_070--Hb_002977_010 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_006316_070--Hb_002477_150 Hb_001584_170 Hb_001584_170 Hb_006316_070--Hb_001584_170 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_002609_010--Hb_148209_020 Hb_002609_010--Hb_006316_070 Hb_000413_170 Hb_000413_170 Hb_002609_010--Hb_000413_170 Hb_001247_230 Hb_001247_230 Hb_002609_010--Hb_001247_230 Hb_000265_250 Hb_000265_250 Hb_002609_010--Hb_000265_250 Hb_011465_030--Hb_002477_150 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_005038_020--Hb_005399_020 Hb_005038_020--Hb_012395_160 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
348.23 378.355 64.2433 59.5688 318.826 298.007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.4857 82.3815 90.8977 92.2504 29.8726

CAGE analysis