Hb_002849_090

Information

Type -
Description -
Location Contig2849: 67982-74577
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16380g
description POPTRDRAFT_830383; hypothetical protein
nr
ID XP_002302598.1
description hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
swissprot
ID Q66PF2
description Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1
trembl
ID B9GQB9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16380g PE=4 SV=1
Gene Ontology
ID GO:0035251
description udp-rhamnose:rhamnosyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29827: 67948-69516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_090 0.0 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
2 Hb_000085_290 0.1645825993 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
3 Hb_001579_290 0.1716669958 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
4 Hb_001691_030 0.1844207736 - - lipoxygenase, putative [Ricinus communis]
5 Hb_001414_020 0.1894601421 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
6 Hb_177321_040 0.1947444896 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
7 Hb_002603_030 0.2037616142 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
8 Hb_004976_050 0.2074188097 - - -
9 Hb_006141_030 0.2099810653 - - -
10 Hb_001268_330 0.2181331536 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_002235_050 0.2184070832 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
12 Hb_000120_720 0.2277487013 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
13 Hb_000421_270 0.2280017598 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
14 Hb_002025_350 0.2327868298 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
15 Hb_004129_050 0.2376493187 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
16 Hb_000116_590 0.2381322689 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
17 Hb_000173_260 0.2395375611 - - hypothetical protein L484_010046 [Morus notabilis]
18 Hb_002701_160 0.2395709881 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
19 Hb_003659_010 0.2405618209 - - aldo/keto reductase AKR [Manihot esculenta]
20 Hb_012753_190 0.2421335998 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]

Gene co-expression network

sample Hb_002849_090 Hb_002849_090 Hb_000085_290 Hb_000085_290 Hb_002849_090--Hb_000085_290 Hb_001579_290 Hb_001579_290 Hb_002849_090--Hb_001579_290 Hb_001691_030 Hb_001691_030 Hb_002849_090--Hb_001691_030 Hb_001414_020 Hb_001414_020 Hb_002849_090--Hb_001414_020 Hb_177321_040 Hb_177321_040 Hb_002849_090--Hb_177321_040 Hb_002603_030 Hb_002603_030 Hb_002849_090--Hb_002603_030 Hb_000556_180 Hb_000556_180 Hb_000085_290--Hb_000556_180 Hb_000085_290--Hb_002603_030 Hb_000473_070 Hb_000473_070 Hb_000085_290--Hb_000473_070 Hb_009296_060 Hb_009296_060 Hb_000085_290--Hb_009296_060 Hb_002304_190 Hb_002304_190 Hb_000085_290--Hb_002304_190 Hb_001579_290--Hb_001691_030 Hb_001579_290--Hb_002603_030 Hb_001691_220 Hb_001691_220 Hb_001579_290--Hb_001691_220 Hb_001579_290--Hb_000085_290 Hb_001268_330 Hb_001268_330 Hb_001579_290--Hb_001268_330 Hb_001691_030--Hb_001268_330 Hb_001691_030--Hb_002603_030 Hb_004976_050 Hb_004976_050 Hb_001691_030--Hb_004976_050 Hb_000815_280 Hb_000815_280 Hb_001691_030--Hb_000815_280 Hb_007423_020 Hb_007423_020 Hb_001414_020--Hb_007423_020 Hb_002539_010 Hb_002539_010 Hb_001414_020--Hb_002539_010 Hb_000720_090 Hb_000720_090 Hb_001414_020--Hb_000720_090 Hb_008749_020 Hb_008749_020 Hb_001414_020--Hb_008749_020 Hb_000625_030 Hb_000625_030 Hb_001414_020--Hb_000625_030 Hb_021409_140 Hb_021409_140 Hb_001414_020--Hb_021409_140 Hb_002235_050 Hb_002235_050 Hb_177321_040--Hb_002235_050 Hb_001946_220 Hb_001946_220 Hb_177321_040--Hb_001946_220 Hb_002913_010 Hb_002913_010 Hb_177321_040--Hb_002913_010 Hb_003659_010 Hb_003659_010 Hb_177321_040--Hb_003659_010 Hb_001123_220 Hb_001123_220 Hb_177321_040--Hb_001123_220 Hb_007576_140 Hb_007576_140 Hb_177321_040--Hb_007576_140 Hb_000705_090 Hb_000705_090 Hb_002603_030--Hb_000705_090 Hb_006573_260 Hb_006573_260 Hb_002603_030--Hb_006573_260 Hb_111985_120 Hb_111985_120 Hb_002603_030--Hb_111985_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.90197 1.49187 7.84416 2.20369 0.465622 0.269821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0826 2.0883 0.776201 16.6191 1.24328

CAGE analysis