Hb_002849_130

Information

Type -
Description -
Location Contig2849: 106372-118186
Sequence    

Annotation

kegg
ID rcu:RCOM_1616210
description hypothetical protein
nr
ID XP_012083339.1
description PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
swissprot
ID Q69ZJ7
description RAB6A-GEF complex partner protein 1 OS=Mus musculus GN=Ric1 PE=2 SV=2
trembl
ID A0A067K9U8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29832: 106430-117209 , PASA_asmbl_29833: 111662-111903 , PASA_asmbl_29834: 115295-117684 , PASA_asmbl_29835: 117991-118236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_130 0.0 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
2 Hb_000313_220 0.0345223875 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
3 Hb_000976_140 0.038434814 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
4 Hb_005730_040 0.0483417487 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
5 Hb_093458_040 0.0497080707 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
6 Hb_003428_010 0.0525688406 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
7 Hb_015807_050 0.0544217542 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
8 Hb_002989_020 0.0546751358 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
9 Hb_000258_070 0.0570037646 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
10 Hb_004109_320 0.0585974269 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
11 Hb_014834_150 0.0604271594 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000365_230 0.0606906014 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
13 Hb_007248_030 0.0612585676 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
14 Hb_000340_530 0.0621056011 - - hypothetical protein VITISV_016664 [Vitis vinifera]
15 Hb_005867_070 0.0641430094 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001481_060 0.0653081049 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
17 Hb_003517_040 0.0657142413 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
18 Hb_183433_010 0.0661019743 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_000347_430 0.0670483341 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
20 Hb_000339_040 0.0670968703 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_130 Hb_002849_130 Hb_000313_220 Hb_000313_220 Hb_002849_130--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_002849_130--Hb_000976_140 Hb_005730_040 Hb_005730_040 Hb_002849_130--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_002849_130--Hb_093458_040 Hb_003428_010 Hb_003428_010 Hb_002849_130--Hb_003428_010 Hb_015807_050 Hb_015807_050 Hb_002849_130--Hb_015807_050 Hb_000313_220--Hb_000976_140 Hb_000313_220--Hb_015807_050 Hb_001959_110 Hb_001959_110 Hb_000313_220--Hb_001959_110 Hb_004452_110 Hb_004452_110 Hb_000313_220--Hb_004452_110 Hb_000313_220--Hb_005730_040 Hb_000976_140--Hb_005730_040 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090 Hb_005867_070 Hb_005867_070 Hb_005730_040--Hb_005867_070 Hb_000708_030 Hb_000708_030 Hb_005730_040--Hb_000708_030 Hb_005730_040--Hb_000170_090 Hb_001225_040 Hb_001225_040 Hb_005730_040--Hb_001225_040 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_002989_020 Hb_002989_020 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_109980_010 Hb_109980_010 Hb_015807_050--Hb_109980_010 Hb_000035_470 Hb_000035_470 Hb_015807_050--Hb_000035_470 Hb_000258_070 Hb_000258_070 Hb_015807_050--Hb_000258_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3143 13.1454 14.2806 16.0764 11.3708 10.5755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1078 12.2456 9.98464 11.8934 13.8487

CAGE analysis