Hb_002849_140

Information

Type -
Description -
Location Contig2849: 134411-138859
Sequence    

Annotation

kegg
ID rcu:RCOM_1616200
description zinc finger protein, putative
nr
ID KDP28595.1
description hypothetical protein JCGZ_14366 [Jatropha curcas]
swissprot
ID Q9SUS5
description E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1
trembl
ID A0A067K8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14366 PE=4 SV=1
Gene Ontology
ID GO:0005623
description e3 ubiquitin-protein ligase rha1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 026_D14.ab1: 138228-138904 , 035_P10.ab1: 138224-138922

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_140 0.0 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
2 Hb_128524_020 0.1589622098 - - PREDICTED: aspartic proteinase-like protein 2 isoform X2 [Jatropha curcas]
3 Hb_000538_030 0.1725573503 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_001123_200 0.1762808474 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004965_050 0.1893949789 - - PREDICTED: uncharacterized protein LOC105645055 [Jatropha curcas]
6 Hb_006909_060 0.1955645111 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
7 Hb_000394_110 0.198649886 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_023344_080 0.1991672027 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
9 Hb_007558_020 0.2033951717 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
10 Hb_004920_070 0.2091878233 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
11 Hb_003605_240 0.2093647549 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
12 Hb_000210_010 0.2103528782 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
13 Hb_009233_030 0.2152891994 - - protein binding protein, putative [Ricinus communis]
14 Hb_003147_070 0.2206019131 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
15 Hb_001856_200 0.2208238872 - - Esterase PIR7B, putative [Ricinus communis]
16 Hb_002110_240 0.2217997881 - - clathrin assembly protein, putative [Ricinus communis]
17 Hb_005686_050 0.2263655064 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
18 Hb_000510_230 0.2266831545 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
19 Hb_004324_300 0.2288314953 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
20 Hb_002671_090 0.2301710157 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_140 Hb_002849_140 Hb_128524_020 Hb_128524_020 Hb_002849_140--Hb_128524_020 Hb_000538_030 Hb_000538_030 Hb_002849_140--Hb_000538_030 Hb_001123_200 Hb_001123_200 Hb_002849_140--Hb_001123_200 Hb_004965_050 Hb_004965_050 Hb_002849_140--Hb_004965_050 Hb_006909_060 Hb_006909_060 Hb_002849_140--Hb_006909_060 Hb_000394_110 Hb_000394_110 Hb_002849_140--Hb_000394_110 Hb_128524_020--Hb_004965_050 Hb_002675_200 Hb_002675_200 Hb_128524_020--Hb_002675_200 Hb_031822_010 Hb_031822_010 Hb_128524_020--Hb_031822_010 Hb_003001_020 Hb_003001_020 Hb_128524_020--Hb_003001_020 Hb_168707_040 Hb_168707_040 Hb_128524_020--Hb_168707_040 Hb_001856_200 Hb_001856_200 Hb_000538_030--Hb_001856_200 Hb_000432_090 Hb_000432_090 Hb_000538_030--Hb_000432_090 Hb_003605_240 Hb_003605_240 Hb_000538_030--Hb_003605_240 Hb_141990_040 Hb_141990_040 Hb_000538_030--Hb_141990_040 Hb_000538_030--Hb_006909_060 Hb_001123_200--Hb_003605_240 Hb_001377_360 Hb_001377_360 Hb_001123_200--Hb_001377_360 Hb_000179_240 Hb_000179_240 Hb_001123_200--Hb_000179_240 Hb_000976_280 Hb_000976_280 Hb_001123_200--Hb_000976_280 Hb_002685_200 Hb_002685_200 Hb_001123_200--Hb_002685_200 Hb_004324_300 Hb_004324_300 Hb_001123_200--Hb_004324_300 Hb_004965_050--Hb_002685_200 Hb_004965_050--Hb_000179_240 Hb_003077_050 Hb_003077_050 Hb_004965_050--Hb_003077_050 Hb_000072_190 Hb_000072_190 Hb_004965_050--Hb_000072_190 Hb_004117_170 Hb_004117_170 Hb_004965_050--Hb_004117_170 Hb_171900_020 Hb_171900_020 Hb_004965_050--Hb_171900_020 Hb_000210_010 Hb_000210_010 Hb_006909_060--Hb_000210_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_001944_020 Hb_001944_020 Hb_006909_060--Hb_001944_020 Hb_000510_230 Hb_000510_230 Hb_000394_110--Hb_000510_230 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80089 22.5737 15.8885 6.53955 1.55844 0.75877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63362 18.6842 16.8018 1.79193 1.11326

CAGE analysis