Hb_002849_160

Information

Type -
Description -
Location Contig2849: 159360-160712
Sequence    

Annotation

kegg
ID rcu:RCOM_1616170
description hypothetical protein
nr
ID XP_012083342.1
description PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0J8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14369 PE=4 SV=1
Gene Ontology
ID GO:0009791
description polypeptide n-acetylgalactosaminyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_160 0.0 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
2 Hb_001369_230 0.1706333537 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
3 Hb_000406_190 0.1805322816 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_001006_010 0.1893725694 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_007472_080 0.190827119 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
6 Hb_002226_050 0.1921801809 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
7 Hb_002780_060 0.1966135104 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007546_030 0.1999699164 - - transcription cofactor, putative [Ricinus communis]
9 Hb_000041_010 0.2011881149 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
10 Hb_001223_010 0.202681943 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
11 Hb_005883_110 0.2062639521 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
12 Hb_000808_170 0.2069839524 - - protein disulfide isomerase, putative [Ricinus communis]
13 Hb_027337_020 0.2073381869 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
14 Hb_003266_020 0.2081280212 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
15 Hb_001195_140 0.2097208019 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
16 Hb_000271_120 0.2107381324 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
17 Hb_004218_250 0.2119170826 - - PREDICTED: beta-galactosidase [Jatropha curcas]
18 Hb_000008_410 0.2119559692 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
19 Hb_000668_110 0.2129949105 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
20 Hb_118157_020 0.2136522374 - - hypothetical protein MTR_3g456110 [Medicago truncatula]

Gene co-expression network

sample Hb_002849_160 Hb_002849_160 Hb_001369_230 Hb_001369_230 Hb_002849_160--Hb_001369_230 Hb_000406_190 Hb_000406_190 Hb_002849_160--Hb_000406_190 Hb_001006_010 Hb_001006_010 Hb_002849_160--Hb_001006_010 Hb_007472_080 Hb_007472_080 Hb_002849_160--Hb_007472_080 Hb_002226_050 Hb_002226_050 Hb_002849_160--Hb_002226_050 Hb_002780_060 Hb_002780_060 Hb_002849_160--Hb_002780_060 Hb_000317_350 Hb_000317_350 Hb_001369_230--Hb_000317_350 Hb_003266_020 Hb_003266_020 Hb_001369_230--Hb_003266_020 Hb_009732_020 Hb_009732_020 Hb_001369_230--Hb_009732_020 Hb_005883_110 Hb_005883_110 Hb_001369_230--Hb_005883_110 Hb_000559_070 Hb_000559_070 Hb_001369_230--Hb_000559_070 Hb_000041_060 Hb_000041_060 Hb_001369_230--Hb_000041_060 Hb_005695_080 Hb_005695_080 Hb_000406_190--Hb_005695_080 Hb_001080_030 Hb_001080_030 Hb_000406_190--Hb_001080_030 Hb_014006_010 Hb_014006_010 Hb_000406_190--Hb_014006_010 Hb_000032_020 Hb_000032_020 Hb_000406_190--Hb_000032_020 Hb_001865_010 Hb_001865_010 Hb_000406_190--Hb_001865_010 Hb_000731_290 Hb_000731_290 Hb_000406_190--Hb_000731_290 Hb_001006_010--Hb_007472_080 Hb_000866_110 Hb_000866_110 Hb_001006_010--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_001006_010--Hb_005181_050 Hb_000271_120 Hb_000271_120 Hb_001006_010--Hb_000271_120 Hb_011925_020 Hb_011925_020 Hb_001006_010--Hb_011925_020 Hb_000049_250 Hb_000049_250 Hb_001006_010--Hb_000049_250 Hb_007546_030 Hb_007546_030 Hb_007472_080--Hb_007546_030 Hb_007472_080--Hb_000866_110 Hb_007472_080--Hb_005181_050 Hb_001477_020 Hb_001477_020 Hb_007472_080--Hb_001477_020 Hb_000661_260 Hb_000661_260 Hb_007472_080--Hb_000661_260 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_001341_020 Hb_001341_020 Hb_002226_050--Hb_001341_020 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_001223_010 Hb_001223_010 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010 Hb_000022_170 Hb_000022_170 Hb_002780_060--Hb_000022_170 Hb_000505_100 Hb_000505_100 Hb_002780_060--Hb_000505_100 Hb_000800_110 Hb_000800_110 Hb_002780_060--Hb_000800_110 Hb_000175_120 Hb_000175_120 Hb_002780_060--Hb_000175_120 Hb_005892_020 Hb_005892_020 Hb_002780_060--Hb_005892_020 Hb_000035_010 Hb_000035_010 Hb_002780_060--Hb_000035_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.666577 1.36739 0.817638 0.259198 0.0713511 0.484431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.582168 0.228911 0.16722 2.30808 2.13584

CAGE analysis