Hb_002849_170

Information

Type -
Description -
Location Contig2849: 179479-187136
Sequence    

Annotation

kegg
ID rcu:RCOM_1616150
description hypothetical protein
nr
ID XP_012083344.1
description PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
swissprot
ID A6QLK4
description Transmembrane protein 8B OS=Bos taurus GN=TMEM8B PE=2 SV=1
trembl
ID A0A067K8K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14371 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 8b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29839: 179562-183428 , PASA_asmbl_29840: 179562-181126 , PASA_asmbl_29841: 179605-180586 , PASA_asmbl_29843: 183472-185898 , PASA_asmbl_29844: 186180-186933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002849_170 0.0 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
2 Hb_001673_050 0.0492266023 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
3 Hb_000340_030 0.0586899129 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
4 Hb_031641_010 0.0604679668 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001723_010 0.0636773363 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
6 Hb_000529_060 0.0656640509 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
7 Hb_004976_010 0.0659502544 - - hypothetical protein RCOM_1429110 [Ricinus communis]
8 Hb_000336_020 0.0687234621 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
9 Hb_000996_020 0.068864623 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
10 Hb_009252_050 0.0711885783 - - protein binding protein, putative [Ricinus communis]
11 Hb_003142_040 0.0714318223 - - Sf3a3 [Gossypium arboreum]
12 Hb_004429_010 0.0729661828 - - calcineurin-like phosphoesterase [Manihot esculenta]
13 Hb_004204_130 0.073353812 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
14 Hb_134362_010 0.0739843302 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
15 Hb_000879_040 0.0752356331 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
16 Hb_001171_030 0.075493859 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
17 Hb_000676_330 0.0765078368 - - protein with unknown function [Ricinus communis]
18 Hb_004517_020 0.077822063 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
19 Hb_000011_100 0.0785904688 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
20 Hb_001430_080 0.0788688971 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]

Gene co-expression network

sample Hb_002849_170 Hb_002849_170 Hb_001673_050 Hb_001673_050 Hb_002849_170--Hb_001673_050 Hb_000340_030 Hb_000340_030 Hb_002849_170--Hb_000340_030 Hb_031641_010 Hb_031641_010 Hb_002849_170--Hb_031641_010 Hb_001723_010 Hb_001723_010 Hb_002849_170--Hb_001723_010 Hb_000529_060 Hb_000529_060 Hb_002849_170--Hb_000529_060 Hb_004976_010 Hb_004976_010 Hb_002849_170--Hb_004976_010 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_004429_010 Hb_004429_010 Hb_001673_050--Hb_004429_010 Hb_000340_030--Hb_001723_010 Hb_000139_320 Hb_000139_320 Hb_000340_030--Hb_000139_320 Hb_000340_030--Hb_031641_010 Hb_003711_010 Hb_003711_010 Hb_000340_030--Hb_003711_010 Hb_000340_030--Hb_000529_060 Hb_000809_160 Hb_000809_160 Hb_031641_010--Hb_000809_160 Hb_031641_010--Hb_001723_010 Hb_031641_010--Hb_000529_060 Hb_004204_130 Hb_004204_130 Hb_031641_010--Hb_004204_130 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_001723_010--Hb_003711_010 Hb_001723_010--Hb_000139_320 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_012565_050 Hb_012565_050 Hb_004976_010--Hb_012565_050 Hb_055235_020 Hb_055235_020 Hb_004976_010--Hb_055235_020 Hb_001430_080 Hb_001430_080 Hb_004976_010--Hb_001430_080 Hb_007044_110 Hb_007044_110 Hb_004976_010--Hb_007044_110 Hb_001636_050 Hb_001636_050 Hb_004976_010--Hb_001636_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61835 9.20865 6.82563 6.85983 6.2287 4.77616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41427 3.94919 3.08621 7.8205 6.52036

CAGE analysis